1 5' 3' | 2 5' 3' | 3 5' 3' |
...cgcgccaattgcctaacgtagctaatgtctggtagaaacagtgttctcaattgttcattggaccatttactgaaaatctgaaacgggctgaaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTGAAGCCAGTGAAATTAGACAGCTGAGTTCTTGCGATAAGTGCCTGAATA
species | Zea mays |
transcript | GRMZM2G109429_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|37382347|gb|CF628115.1|CF628115
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|78027093|gb|DV495480.1|DV495480
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|28422521|gb|CB251924.1|CB251924
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|33095813|gb|CF055807.1|CF055807
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|13558509|gb|BG549865.1|BG549865
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAEST: gi|211122267|gb|FL373642.1|FL373642
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGA
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|148934019|gb|EC878027.2|EC878027
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|5058588|gb|AI737064.1|AI737064
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|37388132|gb|CF631272.1|CF631272
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|211444189|gb|FL421109.1|FL421109
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|60349419|gb|DN216392.1|DN216392
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|211214746|gb|FL397473.1|FL397473
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACAYTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|211401574|gb|FL440163.1|FL440163
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|13558052|gb|BG549408.1|BG549408
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAEST: gi|211264271|gb|FL294955.1|FL294955
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCA
EST: CCAAAGCTCATAATGCTTGACAACNAGGGTGAACAGAAGGAGACCATAAG GATTTGATAACTGGEST: gi|13558051|gb|BG549407.1|BG549407
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATT-GATAACTGG
EST: CAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGEST: gi|211173040|gb|FL404342.1|FL404342
genomic: CAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACC-ATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAG
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACAEST: gi|13562227|gb|BG550447.1|BG550447
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACA
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|148934022|gb|EC878030.2|EC878030
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|78090328|gb|DV518702.1|DV518702
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTTCTCAAGGAGAAAGEST: gi|148953620|gb|EC898976.2|EC898976
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTT-CTCAAGGAGAAAG
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|18181460|gb|BM382670.1|BM382670
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|211489672|gb|FL462920.1|FL462920
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTEST: gi|78090327|gb|DV518701.1|DV518701
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
EST: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAG GATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
genomic: CCAAAGCTCATAATGCTTGACAACAAGGGTGAACAGAAGGAGACCATAAGgcaagtccta ... aaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGT
ctcaattgttcattggaccatttactgaaaatctgaaacgggctgaaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTGAAGCCAGTGAAATTAGACAGCTGAGTTCTTGCGATAAGTGCCTGAATA
atttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcgccaattgcctaacgtagctaatgtctggtagaaacagtgttctcaattgttcattggaccatttactgaaaatctgaaacgggctgaaattggcagGATTGATAACTGGAAGCGAGAGCACATTCGGCAGTTTCTCAAGGAGAAAGTGAAGCCAGTGAAATTAGACAGCTGAGTTCTTGCGATAAGTGCCTGAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - gctaatg
- - - - - - - - - - - - - - - - -agaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttactg