1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaattttgctgacagaggaagtttttgcaccatccgggttgagattttggttcttgctccttgcagGCGTGGATGCTGTGGTTGCGGACATGCTTGATCTGCCGTTTGAGCATGAGAGCTTTGATCTCGTCATTGAAAAGGGCACCATG
species | Zea mays |
transcript | GRMZM2G109032_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTCGCCGTCCAGCGGATGCGCGACCGCCTCGCCGCTCTTGGCACCAAAG GCGTGGATGCTGTGGTTGCGGACATGCTTGATCTGCCGTTTGAGCATGAGAEST: gi|211091483|gb|FK999631.1|FK999631
genomic: CGTCGCCGTCCAGCGGATGCGCGACCGCCTCGCCGCTCTTGGCACCAAAGgtaattttgc ... ctccttgcagGCGTGGATGCTGTGGTTGCGGACATGCTTGATCTGCCGTTTGAGCATGAGA
EST: CGTCGCCGTCCAGCGGATGCGCGACCGC-TCGCCGCTCTAGGCACCAAAG GCGTGGATGCTGTGGTGGCGGACATGCTTGATCTGCCGTTTGAGCAAGAGAEST: gi|91055797|gb|EB166215.1|EB166215
genomic: CGTCGCCGTCCAGCGGATGCGCGACCGCCTCGCCGCTCTTGGCACCAAAGgtaattttgc ... ctccttgcagGCGTGGATGCTGTGGTTGCGGACATGCTTGATCTGCCGTTTGAGCATGAGA
EST: CGTCGCCGTCCAGCGGATGCGCGACCGCCTCGCCGCTCTTGGCACCAAAG GCGTGGATGCTGTGGTTGCGGACATGCTTGATCTGCCGTTTGAGCATGAGAEST: gi|211226341|gb|FL315377.1|FL315377
genomic: CGTCGCCGTCCAGCGGATGCGCGACCGCCTCGCCGCTCTTGGCACCAAAGgtaattttgc ... ctccttgcagGCGTGGATGCTGTGGTTGCGGACATGCTTGATCTGCCGTTTGAGCATGAGA
EST: CGTCGCCGTCCAGCGGATGCGCGACCGCCTCGCCGCTCTAGGCACCAAAG GCGTGGATGCTGTGGTGGCGSACATGCTTGATCTGCCGTTTGAGCAAGAGAEST: gi|71770180|gb|DR968117.1|DR968117
genomic: CGTCGCCGTCCAGCGGATGCGCGACCGCCTCGCCGCTCTTGGCACCAAAGgtaattttgc ... ctccttgcagGCGTGGATGCTGTGGTTGCGGACATGCTTGATCTGCCGTTTGAGCATGAGA
EST: CGTCGCCGTCCAGCGGATGCGCGACCGCCTCGCCGCTCTTGGCACCAAAG GCGTGGATGCTGTGGTTGCGGACATGCTTGATCTGCCGTTTGAGCATGAGAEST: gi|211091484|gb|FK999632.1|FK999632
genomic: CGTCGCCGTCCAGCGGATGCGCGACCGCCTCGCCGCTCTTGGCACCAAAGgtaattttgc ... ctccttgcagGCGTGGATGCTGTGGTTGCGGACATGCTTGATCTGCCGTTTGAGCATGAGA
EST: CGTCGCCGTCCAGCGGATGCGCGACCGCCTCGCCGCTCTAGGCACCAAAG GCGTGGATGCTGTGGTGGCGGACATGCTTGATCTGCCGTTTGAGCAAGAGA
genomic: CGTCGCCGTCCAGCGGATGCGCGACCGCCTCGCCGCTCTTGGCACCAAAGgtaattttgc ... ctccttgcagGCGTGGATGCTGTGGTTGCGGACATGCTTGATCTGCCGTTTGAGCATGAGA
acagaggaagtttttgcaccatccgggttgagattttggttcttgctccttgcagGCGTGGATGCTGTGGTTGCGGACATGCTTGATCTGCCGTTTGAGCATGAGAGCTTTGATCTCGTCATTGAAAAGGGCACCATG
tgctgac putative branch site (score: 7)
ttcttgctccttgc putative PPT
aagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttgctgacagaggaagtttttgcaccatccgggttgagattttggttcttgctccttgcagGCGTGGATGCTGTGGTTGCGGACATGCTTGATCTGCCGTTTGAGCATGAGAGCTTTGATCTCGTCATTGAAAAGGGCACCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT