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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttttaagaagcatcttcttatacccctcaaatcaacctagtttccatgtttgtacaattactcatggtataacatgtgtactgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCCTCACGTAATCCTTACTTTTCAAACTATACC

Basic information

species Zea mays
transcript GRMZM2G108849_T04
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14191382|gb|BG833612.1|BG833612
EST:     TTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCCCAGTGCTGTGTTTTCAGCC
genomic: TTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211436678|gb|FL284626.1|FL284626
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211491808|gb|FL092423.1|FL092423
EST:     GTACTTGGAGTT-GCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211436684|gb|FL284632.1|FL284632
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|26557852|gb|CA830087.1|CA830087
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211439272|gb|FL284639.1|FL284639
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211486047|gb|FL092399.1|FL092399
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211436683|gb|FL284631.1|FL284631
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|76282755|gb|DV022323.1|DV022323
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211436676|gb|FL284624.1|FL284624
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|13316069|gb|BG410516.1|BG410516
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGTC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211491804|gb|FL092419.1|FL092419
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|33092955|gb|CF052949.1|CF052949
EST:     ACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCNCAGTGCTGGGTGGACAGCC
genomic: ACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211436677|gb|FL284625.1|FL284625
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211439281|gb|FL284648.1|FL284648
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211488929|gb|FL092414.1|FL092414
EST:     TTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: TTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211439276|gb|FL284643.1|FL284643
EST:     GTACTTGGAGTTGTCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211488922|gb|FL092407.1|FL092407
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211439283|gb|FL284650.1|FL284650
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|60345830|gb|DN212803.1|DN212803
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|13177948|gb|BG349206.1|BG349206
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211436681|gb|FL284629.1|FL284629
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211491801|gb|FL092416.1|FL092416
EST:     GAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|14191380|gb|BG833610.1|BG833610
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211042386|gb|FL284653.1|FL284653
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211436674|gb|FL284622.1|FL284622
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|14191381|gb|BG833611.1|BG833611
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|93281375|gb|EB673639.1|EB673639
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|33101185|gb|CF061145.1|CF061145
EST:     ACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: ACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211486039|gb|FL092391.1|FL092391
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211439270|gb|FL284637.1|FL284637
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211439277|gb|FL284644.1|FL284644
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211486042|gb|FL092394.1|FL092394
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211439278|gb|FL284645.1|FL284645
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211436686|gb|FL284634.1|FL284634
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211042388|gb|FL284655.1|FL284655
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211436680|gb|FL284628.1|FL284628
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|33093900|gb|CF053894.1|CF053894
EST:     AGGTAC-TGAAGTTGGCAATGGAAACAATCACATGAGAATCATCCAG                         GAGGGCATCATCGAGCCAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: AGGTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211439269|gb|FL284636.1|FL284636
EST:     GTACTTGGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTT-GGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211436679|gb|FL284627.1|FL284627
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211439279|gb|FL284646.1|FL284646
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211491807|gb|FL092422.1|FL092422
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211436673|gb|FL284621.1|FL284621
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211042384|gb|FL284651.1|FL284651
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211042385|gb|FL284652.1|FL284652
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211491803|gb|FL092418.1|FL092418
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATCGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211439275|gb|FL284642.1|FL284642
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
EST: gi|211436682|gb|FL284630.1|FL284630
EST:     GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAG                         GAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC
genomic: GTACTTGGAGTTGGCAATGGAGACAATCACATGAGAATCATCCAGgtttttttaa ... actgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctagtttccatgtttgtacaattactcatggtataacatgtgtactgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCCTCACGTAATCCTTACTTTTCAAACTATACC
                                gtataac  putative branch site (score: 3)
                  tacaatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttttttaagaagcatcttcttatacccctcaaatcaacctagtttccatgtttgtacaattactcatggtataacatgtgtactgtcacagGAGGACATCATTGAGACAGTCAACAACCATCCCAGTGCTGGGTGGACAGCCTCACGTAATCCTTACTTTTCAAACTATACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA