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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgcctctagaaatatgtgacgatcatttttttgtcaagttatccatagaaaaaaaatttgaacccagaaatttatatgtttgggatgttctttaaacagGTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGGTGAGAATCTTTATTATTTATGTCGTCATTATCTGCAATCTGAATGCCTTGAA

Basic information

species Zea mays
transcript GRMZM2G108739_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108739_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g57630.2 (Oryza sativa), 3'ss of exon 3
---gtgcctctagaaatatgtgacgatcatttttttgtcaagttat--ccatagaaaaaaaatttgaacccagaaatttatatgtttgggatgttctttaaacagGTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGGTGAGAATCTTTATTATTTATGTCGTCATTATCTGCAATCTGAATGCCTTGAA
   |       ||||| |   | || ||||||   | |||  ||||  |  ||  ||| || | | | |   |   |||| ||   |    | | |||||||||||||||||| ||||||||||| ||||||| |||| ||||| |||||||                                                     
ctggcattgtcagaaaaaaaggccg-tcatttagct-tcagtttatgactttattaaataactcttagct--gccttttacattgctattgtat-ctttaaacagGTGGAAGAACTTTACTCTCTTGATGTGGACTCTATTAGTGAACTGCG-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101394818|gb|EB819343.1|EB819343
EST:     GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG                         GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGGTGA
genomic: GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGgttagcttcc ... ctttaaacagGTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGGTGA
EST: gi|211488685|gb|FL428190.1|FL428190
EST:     GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG                         GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCT
genomic: GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGgttagcttcc ... ctttaaacagGTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCT
EST: gi|101394052|gb|EB818959.1|EB818959
EST:     GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG                         GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGGTGA
genomic: GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGgttagcttcc ... ctttaaacagGTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagaaaaaaaatttgaacccagaaatttatatgtttgggatgttctttaaacagGTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGGTGAGAATCTTTATTATTTATGTCGTCATTATCTGCAATCTGAATGCCTTGAA
                                         tgttcttt  CT-rich tract
                     agaaatttatatgttt  TA-rich tract