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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagaaaggccaaaacaacctataatttgggacacgccgagtaattattggagaacaagaaaaatgagatgataatacattggcagcatttggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGTGACCGGGGTTGCTAAGAAGCAATCAAAAGCCCCCAACGGCAGCAGCAAA

Basic information

species Zea mays
transcript GRMZM2G107807_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107807_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g35600.1 (Oryza sativa), 3'ss of exon 3
ctagaaaggccaaaacaacctataatttgggacacgccgagtaattattggagaacaagaaaaatgagatgataatacattggcagcatttggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGTGACCGGGGTTGCTAAGAAGCAATCAAAAGCCCCCAACGGCAGCAGCAAA
 ||     |  | |  | ||  |   |||  || |  | |  ||   |          | | ||   ||  ||| | |||     ||||||| ||||||||||| ||||||||||||||||||||   || |||||||| |||||||||||||| ||  |||| ||||||||| |||||| | |||||||||||||||||
ttatctgagtaatattatccagtgcattgtcactcaacaatcaacattatattgtttggtagaaaatgacaatagtccataactggcatttgaatttcagGAGACGGCTCTTCACCATGATTAATGGTCTTCCCACTGTATATGAAGTTGTGACGGGAATTGCCAAGAAGCAAACAAAAGTCTCCAACGGCAGCAGCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211131977|gb|FL391860.1|FL391860
EST:     CTTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCAT
genomic: CT-GTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCAT
EST: gi|211456087|gb|FL381465.1|FL381465
EST:     CTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTYTGATAAAGATGCNAG                         GAGAARGCTCTTCACCATGATTAATAACCTGGCCACTGTTTATGAAGTTGT
genomic: CTGTTGCATTCTACTTTGGAGCTCGCTTTGGATT-TGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211533316|gb|FL400721.1|FL400721
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAARGATGCAAG                         GAGAAGGCTCTTCACCATGATTA
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTA
EST: gi|211032021|gb|FL382023.1|FL382023
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGA
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGA
EST: gi|211275133|gb|FL388209.1|FL388209
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGT
EST: gi|211147466|gb|FL403065.1|FL403065
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTG
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTG
EST: gi|211017612|gb|FL417337.1|FL417337
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|60342404|gb|DN209377.1|DN209377
EST:     GTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: GTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|71449245|gb|DR830295.1|DR830295
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211394901|gb|FL373451.1|FL373451
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|9825085|gb|BE575272.1|BE575272
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGCTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211259582|gb|FL073576.1|FL073576
EST:     ATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: ATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211262010|gb|FL073578.1|FL073578
EST:     TTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|47962533|gb|CN845242.1|CN845242
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211481948|gb|FL389371.1|FL389371
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|78104107|gb|DV522525.1|DV522525
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211481949|gb|FL389372.1|FL389372
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|76285556|gb|DV025124.1|DV025124
EST:     GCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: GCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211022044|gb|FL376173.1|FL376173
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGT
EST: gi|71763520|gb|DR961457.1|DR961457
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|32921335|gb|CF026147.1|CF026147
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|76285557|gb|DV025125.1|DV025125
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211518311|gb|FL387235.1|FL387235
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|71444897|gb|DR825947.1|DR825947
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|148935253|gb|EC879290.2|EC879290
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAAGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211239004|gb|FL420053.1|FL420053
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTT
EST: gi|211321008|gb|FL370062.1|FL370062
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCAT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCAT
EST: gi|20301387|gb|BQ164330.1|BQ164330
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCATG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|60394161|gb|DN227031.1|DN227031
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|60351249|gb|DN218222.1|DN218222
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211262011|gb|FL073579.1|FL073579
EST:     GCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: GCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|71433177|gb|DR814227.1|DR814227
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211439565|gb|FL408946.1|FL408946
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTA
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTA
EST: gi|91873364|gb|EB403321.1|EB403321
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|91055582|gb|EB166000.1|EB166000
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211429590|gb|FL426785.1|FL426785
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|22714717|gb|BU197516.1|BU197516
EST:     TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAG                         GAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 315

AAAAAGACTGGTTGTCTCTAGTTGCAGTTCATAGTGATGCGTGGCTCCTGTCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGTGACCGGGGTTGCTAAGAAGCAATCAAAAGCCCCCAACGGCAGCAGCAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 82

AAAAAGACTGGTTGTCTCTAGTTGCAGTTCATAGTGATGCGTGGCTCCTGTCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGTGACCGGGGTTGCTAAGAAGCAATCAAAAGCCCCCAACGGCAGCAGCAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 96

AAAAAGACTGGTTGTCTCTAGTTGCAGTTCATAGTGATGCGTGGCTCCTGTCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGTGACCGGGGTTGCTAAGAAGCAATCAAAAGCCCCCAACGGCAGCAGCAAA


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 46

AAAAAGACTGGTTGTCTCTAGTTGCAGTTCATAGTGATGCGTGGCTCCTGTCTGTTGCATTCTACTTTGGAGCTCGCTTTGGATTTGATAAAGATGCAAGgtttgtgtat ... tggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGTGACCGGGGTTGCTAAGAAGCAATCAAAAGCCCCCAACGGCAGCAGCAAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattggagaacaagaaaaatgagatgataatacattggcagcatttggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGTGACCGGGGTTGCTAAGAAGCAATCAAAAGCCCCCAACGGCAGCAGCAAA
                          ataatacatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctagaaaggccaaaacaacctataatttgggacacgccgagtaattattggagaacaagaaaaatgagatgataatacattggcagcatttggatttcagGAGAAGGCTCTTCACCATGATTAATAACCTGCCCACTGTTTATGAAGTTGTGACCGGGGTTGCTAAGAAGCAATCAAAAGCCCCCAACGGCAGCAGCAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA