1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...caaacataggaaaataaggttttcatcgtggtagagtttgagctccagatgtgccttacgggctgtgtttccttaccatgttttaatgttcttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGGTGGTCAAG
species | Zea mays |
transcript | GRMZM2G107731_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|78116277|gb|DV534664.1|DV534664
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|211002685|gb|FL029004.1|FL029004
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|148994670|gb|EE034191.2|EE034191
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|71436912|gb|DR817962.1|DR817962
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|31354731|gb|CD439088.1|CD439088
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|91874738|gb|EB404695.1|EB404695
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|149071351|gb|EE159746.2|EE159746
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|60358220|gb|DN225193.1|DN225193
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|211397400|gb|FL138820.1|FL138820
genomic: GAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|211002686|gb|FL029005.1|FL029005
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTTATGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|91055771|gb|EB166189.1|EB166189
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|149103903|gb|EE289318.2|EE289318
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|149081200|gb|EE170309.2|EE170309
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|71774542|gb|DR972420.1|DR972420
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|149027108|gb|EE046399.2|EE046399
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|148961119|gb|EE011825.2|EE011825
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAEST: gi|50326867|gb|CO521993.1|CO521993
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
EST: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAG GTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
genomic: GGATCCGGAGCGCGCTCTAGGGGAGCACGGACCCACCACTGCTGCAAGAGgtgattctct ... cttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAA
cagatgtgccttacgggctgtgtttccttaccatgttttaatgttcttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGGTGGTCAAG
ttcttttgtc CT-rich tract
ttttaatgttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaacataggaaaataaggttttcatcgtggtagagtttgagctccagatgtgccttacgggctgtgtttccttaccatgttttaatgttcttttgtcagGTGAAGGATCCTTGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGGTGGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
-aaacata
- - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - -gctccag
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggctgtg