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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagttactagtttagcgcaattcccatgactgattgcgactactggtttttctacacgctctatccatctcggatatgtatcttacattcttactcgtgggtctgtaatgaacggtggtgcagTCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACTGTTGCAGCGCACGACAGCCTCGTCTCGGCCCTGGCATCGTCGAGCTCCGGCCTGGTTG

Basic information

species Zea mays
transcript GRMZM2G107696_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71315852|gb|DR794598.1|DR794598
EST:     GCACTTTCCATCCTACGTACCCATCCTTGCTTATCATTGGCTGTTACCAG                         TCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACTGTTGCAGCG
genomic: GCACTTTCCATCCTACGTACCCATCCTTGCTTATCATTGGCTGTTACCAGgcaagttact ... ggtggtgcagTCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACTGTTGCAGCG
EST: gi|166428584|gb|EG273357.1|EG273357
EST:     TCATTGGCTGTTACCAG                         TCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACCGTTGCAGCG
genomic: TCATTGGCTGTTACCAGgcaagttact ... ggtggtgcagTCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACTGTTGCAGCG
EST: gi|71315850|gb|DR794597.1|DR794597
EST:     GCACTTTCCATCCTACGTACCCATCCTTGCTTATCATTGGCTGTTACCAG                         TCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACTGTTGCAGCG
genomic: GCACTTTCCATCCTACGTACCCATCCTTGCTTATCATTGGCTGTTACCAGgcaagttact ... ggtggtgcagTCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACTGTTGCAGCG
EST: gi|50337776|gb|CO532902.1|CO532902
EST:     GCACTTTCCATCCTACGTACCCATCCTTGCTTATCATTGGCTGTTACCAG                         TCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACTGTTGCAGCG
genomic: GCACTTTCCATCCTACGTACCCATCCTTGCTTATCATTGGCTGTTACCAGgcaagttact ... ggtggtgcagTCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACTGTTGCAGCG
EST: gi|89252030|gb|DY623816.1|DY623816
EST:     GCACTTTCCATCCTACGTACCCATCCTTGCTTATCATTGGCTGTTACCAG                         TCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACTGTTGCAGCG
genomic: GCACTTTCCATCCTACGTACCCATCCTTGCTTATCATTGGCTGTTACCAGgcaagttact ... ggtggtgcagTCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACTGTTGCAGCG
EST: gi|56691703|gb|CX129606.1|CX129606
EST:     GCACTTTCCATCCTACGTACCCATCCTTGCTTATCATTGGCTGTTACCAG                         TCTCTGGAGCTGTGGGACATGTCTGAGAACCGGAGCATGACCGTTGCAGCG
genomic: GCACTTTCCATCCTACGTACCCATCCTTGCTTATCATTGGCTGTTACCAGgcaagttact ... ggtggtgcagTCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACTGTTGCAGCG
EST: gi|86468563|gb|DY234933.1|DY234933
EST:     GCACTTTCCTTCCTACGTACCCATCCTTGCTTATCATTGGCTGTTACCAG                         TCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACTGTTGCAGCG
genomic: GCACTTTCCATCCTACGTACCCATCCTTGCTTATCATTGGCTGTTACCAGgcaagttact ... ggtggtgcagTCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACTGTTGCAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcggatatgtatcttacattcttactcgtgggtctgtaatgaacggtggtgcagTCTCTGGAGCTGTGGGACATGTCCGAGAACCGGAGCATGACTGTTGCAGCGCACGACAGCCTCGTCTCGGCCCTGGCATCGTCGAGCTCCGGCCTGGTTG
                   ttcttac  putative branch site (score: 2)
     atatgtat  TA-rich tract