1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tactagtaaaaaatattggtctcttcgtgaataaaaatcgatgtagagcagaagtcttcttgtgtgatatggtgagacaattagcttttataatctgcagGCTAGCCAGATCACTTTTTCTCAGGACGGGACCATTCCTCCCAGGAAGCCAACTTCAGTTGCTGGGGTGGCGAGGCAGCGCGAACTTAGCCATACCGTTG
species | Zea mays |
transcript | GRMZM2G107495_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGCCGAGAGCGCCGCCGCCGCCGTCACAACTGCATCCCGTGATCGCCAG GCTAGCCAGATCACCTTTTCTCAGGACGGGACCATTCCTCCCAGGAAGCCAEST: gi|87154376|gb|DY399165.1|DY399165
genomic: AGGCCGAGAGCGCCGCCGCCGCCGTCACAACTGCATCCCGTGATCGCCAGgtgcacaact ... taatctgcagGCTAGCCAGATCACTTTTTCTCAGGACGGGACCATTCCTCCCAGGAAGCCA
EST: AGGCCGAGAGCGCCGCCGCCGCCGTCACAACTGCATCCCGTGATCGCCAG GCTAGCCAGATCACTTTTTCTCAGGACGGGACCATTCCTCCCAGGAAGCCAEST: gi|8665438|gb|BE186254.1|BE186254
genomic: AGGCCGAGAGCGCCGCCGCCGCCGTCACAACTGCATCCCGTGATCGCCAGgtgcacaact ... taatctgcagGCTAGCCAGATCACTTTTTCTCAGGACGGGACCATTCCTCCCAGGAAGCCA
EST: CGAGAGCGCCGCCGCCGCCGTCACAACTGCATCCCGTGATCGCCAG GCTAGCCAGATCACCTTTTCTCAGGACGGGACCATTCCTCCCAGGAAGCCAEST: gi|12047355|gb|BF729494.1|BF729494
genomic: CGAGAGCGCCGCCGCCGCCGTCACAACTGCATCCCGTGATCGCCAGgtgcacaact ... taatctgcagGCTAGCCAGATCACTTTTTCTCAGGACGGGACCATTCCTCCCAGGAAGCCA
EST: GCCGCCGCCGCCGTCACAACTGCATCCCGTGATCGCCAG GCTAGCCAGATCACCTTTTCTCAGGACGGGACCATTCCTCCCAGGAAGCCAEST: gi|21480736|gb|BQ577419.1|BQ577419
genomic: GCCGCCGCCGCCGTCACAACTGCATCCCGTGATCGCCAGgtgcacaact ... taatctgcagGCTAGCCAGATCACTTTTTCTCAGGACGGGACCATTCCTCCCAGGAAGCCA
EST: AGGCCGAGAGCGCCGCCGCCGCCGTCACAACTGCATCCCGTGATCGCCAG GCTAGCCAGATCACTTTTTCTCAGGACGGGACCATTCCTCCCAGGGAGCCA
genomic: AGGCCGAGAGCGCCGCCGCCGCCGTCACAACTGCATCCCGTGATCGCCAGgtgcacaact ... taatctgcagGCTAGCCAGATCACTTTTTCTCAGGACGGGACCATTCCTCCCAGGAAGCCA
gagcagaagtcttcttgtgtgatatggtgagacaattagcttttataatctgcagGCTAGCCAGATCACTTTTTCTCAGGACGGGACCATTCCTCCCAGGAAGCCAACTTCAGTTGCTGGGGTGGCGAGGCAGCGCGAACTTAGCCATACCGTTG
cttttat CT-rich tract
aattagcttttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactagtaaaaaatattggtctcttcgtgaataaaaatcgatgtagagcagaagtcttcttgtgtgatatggtgagacaattagcttttataatctgcagGCTAGCCAGATCACTTTTTCTCAGGACGGGACCATTCCTCCCAGGAAGCCAACTTCAGTTGCTGGGGTGGCGAGGCAGCGCGAACTTAGCCATACCGTTG
- - - -aaaaaat
- - - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - -gcagaag