1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgacctatgttttttctgtcttgtacttgaaagaaaatcaagaaagtgagttttacagcatgatttactggtgactgattcagtttcatattgcatgcagGCGAGCAGTACTGTAAGCCACATCTCGTTCGCTGAGGATGGAACCGATCCTCCCAAAAAGCCCACATCAGTAGCTGAGGTGGCAAAGCAGCGTGAGCTTA
species | Zea mays |
transcript | GRMZM2G107473_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGGGAGGCAGCTGCTGCCGAGAAGCCCGCCCGAACCTCCTCGCGCCAG GCGAGCAGTACTGNAAGCCACATCTCGTTCGCTGAGGATGGAACCGATCCTEST: gi|211089737|gb|FL031843.1|FL031843
genomic: CTGGGGAGGCAGCTGCTGCCGCGAAGCCCGCCCGAACCTCCTCGCGCCAGgtgacaaaat ... ttgcatgcagGCGAGCAGTACTGTAAGCCACATCTCGTTCGCTGAGGATGGAACCGATCCT
EST: CTGGGGAGGCAGCTGCTGCCGCGAAGCCCGCCCGAACCTCCTCGCGCCAG GCGAGCAGTACTGNAAGCCACATCTCGTTCGCTGAGGATGGAACCGATCCTEST: gi|211131492|gb|FL330792.1|FL330792
genomic: CTGGGGAGGCAGCTGCTGCCGCGAAGCCCGCCCGAACCTCCTCGCGCCAGgtgacaaaat ... ttgcatgcagGCGAGCAGTACTGTAAGCCACATCTCGTTCGCTGAGGATGGAACCGATCCT
EST: CTGGGGAGGCAGCTGCTGCCGCGAAGCCCGCCCGAACCTCCTCGCGCCAG GCGAGCAGTACTGTAAGCCACATCTCGTTCGCTGAGGATGGAACCGATCCTEST: gi|71441673|gb|DR822723.1|DR822723
genomic: CTGGGGAGGCAGCTGCTGCCGCGAAGCCCGCCCGAACCTCCTCGCGCCAGgtgacaaaat ... ttgcatgcagGCGAGCAGTACTGTAAGCCACATCTCGTTCGCTGAGGATGGAACCGATCCT
EST: CTGGGGAGGCAGCTGCTGCCGCGAAGCCCGCCCGAACCTCCTCGCGCCAG GCGAGCAGTACTGTAAGCCACATCTCGTTCGCTGAGGATGGAACCGATCCTEST: gi|5932677|gb|AW057038.1|AW057038
genomic: CTGGGGAGGCAGCTGCTGCCGCGAAGCCCGCCCGAACCTCCTCGCGCCAGgtgacaaaat ... ttgcatgcagGCGAGCAGTACTGTAAGCCACATCTCGTTCGCTGAGGATGGAACCGATCCT
EST: CTGGGGAGGCAGCTGCTGCCGCGAAGCCCGCCCGAACCTCCTCGCGCCAG GCGAGCAGTACTGTAAGCCACATCTCGTTCGCTGAGGATGGAACCGATCCT
genomic: CTGGGGAGGCAGCTGCTGCCGCGAAGCCCGCCCGAACCTCCTCGCGCCAGgtgacaaaat ... ttgcatgcagGCGAGCAGTACTGTAAGCCACATCTCGTTCGCTGAGGATGGAACCGATCCT
gtgagttttacagcatgatttactggtgactgattcagtttcatattgcatgcagGCGAGCAGTACTGTAAGCCACATCTCGTTCGCTGAGGATGGAACCGATCCTCCCAAAAAGCCCACATCAGTAGCTGAGGTGGCAAAGCAGCGTGAGCTTA
gactgat putative branch site (score: 118)
tttcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacctatgttttttctgtcttgtacttgaaagaaaatcaagaaagtgagttttacagcatgatttactggtgactgattcagtttcatattgcatgcagGCGAGCAGTACTGTAAGCCACATCTCGTTCGCTGAGGATGGAACCGATCCTCCCAAAAAGCCCACATCAGTAGCTGAGGTGGCAAAGCAGCGTGAGCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - -ttttctg
- - - - - - - - - - - gtacttg
- - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - caagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattca