1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaaatccaaaacatcttataattcagaacgaaggtgagtattagtcctgatgagaaggattctgatacaattctttgttttacatgcattatcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCTGGTGGAAGATGGGAAGCAAAAGGCTTCTATACGAAGCGCTTATTGAGCC
species | Zea mays |
transcript | GRMZM2G107309_T08 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACATATGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCTEST: gi|211440335|gb|FL443588.1|FL443588
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA GCAATGAGCTGAAGAAAAGGAAGCGTTCAGGAGGAGGACCAGGGCCCTTCTEST: gi|211416083|gb|FK952661.1|FK952661
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCTEST: gi|211183239|gb|FL432688.1|FL432688
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA GCAATGAGCTGAAGAAAAGGAAGCGTTCAGGAGGAGGACCAGGGCCCTTYTEST: gi|148946012|gb|EC891307.2|EC891307
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTTTTCCATTCATA GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCTEST: gi|5688538|gb|AI941553.1|AI941553
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: AACATATGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCTEST: gi|31356978|gb|CD441335.1|CD441335
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCTEST: gi|71445686|gb|DR826736.1|DR826736
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCTEST: gi|71449896|gb|DR830946.1|DR830946
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCTEST: gi|149082860|gb|EE172086.2|EE172086
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: AACATACGCATCCCTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCTEST: gi|91050278|gb|EB160696.1|EB160696
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
cctgatgagaaggattctgatacaattctttgttttacatgcattatcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCTGGTGGAAGATGGGAAGCAAAAGGCTTCTATACGAAGCGCTTATTGAGCC
ttctgat putative branch site (score: 96)
aattctttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatccaaaacatcttataattcagaacgaaggtgagtattagtcctgatgagaaggattctgatacaattctttgttttacatgcattatcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCTGGTGGAAGATGGGAAGCAAAAGGCTTCTATACGAAGCGCTTATTGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA