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...ttaagaatctgaatgtgttccactgaatcaatttctcatgtgcctattgcatccagttctgaatttctcgtttgctcacactattgactattctatgcagGGTTGCTGCCAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCCACAGTGAG
species | Zea mays |
transcript | GRMZM2G107309_T07 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCTTCAAAAAGCAAATTGCACAAACAGCTTTGTTATCTGCTGACACAG GGTTGCTGCCAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCCEST: gi|6564072|gb|AW231694.1|AW231694
genomic: TGTCTTCAAAAAGCAAATTGCACAAACAGCTTTGTTATCTGCTGACACAGgtgttgtttg ... ttctatgcagGGTTGCTGCCAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCC
EST: CTTNTCAAAAAGNCAAATTGCACAAACAGCTTTGTTATCTGCTGACACAG GGTTGCTGCCAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCCEST: gi|78112912|gb|DV531306.1|DV531306
genomic: C-T-TCAAAAAG-CAAATTGCACAAACAGCTTTGTTATCTGCTGACACAGgtgttgtttg ... ttctatgcagGGTTGCTGCCAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCC
EST: TGTCTTCAAAAAGCAAATTGCACAAACAGCTTTGTTATCTGCTGACACAG GGTTGCTGCCAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCCEST: gi|32823056|gb|CD962765.1|CD962765
genomic: TGTCTTCAAAAAGCAAATTGCACAAACAGCTTTGTTATCTGCTGACACAGgtgttgtttg ... ttctatgcagGGTTGCTGCCAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCC
EST: TGTCTTCAAAAAGCAAATTGCACAAACAGCTTTGTTATCTGCTGACACAG GGTTGCTGCCAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCC
genomic: TGTCTTCAAAAAGCAAATTGCACAAACAGCTTTGTTATCTGCTGACACAGgtgttgtttg ... ttctatgcagGGTTGCTGCCAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCC
attgcatccagttctgaatttctcgtttgctcacactattgactattctatgcagGGTTGCTGCCAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCCACAGTGAG
tattgac putative branch site (score: 2)
ctattct CT-rich tract
tattctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaagaatctgaatgtgttccactgaatcaatttctcatgtgcctattgcatccagttctgaatttctcgtttgctcacactattgactattctatgcagGGTTGCTGCCAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCCACAGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT