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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacataatggttttgcctcactttattcttgctgtagattgtttgcttgtcgctttcatggagcgtgtctgtgggtacttttgcttgcccgcttgcatttatgtcgtgctgctgttgcttgccattcagaagGCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCTGGGACGCCACCATCGATGTACCTTGGTGGGGGCGCTCCCCCATATGGAT

Basic information

species Zea mays
transcript GRMZM2G107106_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87157624|gb|DY402413.1|DY402413
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|87157624|gb|DY402413.1|DY402413
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|87157624|gb|DY402413.1|DY402413
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|71765408|gb|DR963345.1|DR963345
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         GCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaagGCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
EST: gi|26559761|gb|CA831996.1|CA831996
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|26559761|gb|CA831996.1|CA831996
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|26559761|gb|CA831996.1|CA831996
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|26559278|gb|CA831513.1|CA831513
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|26559278|gb|CA831513.1|CA831513
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|26559278|gb|CA831513.1|CA831513
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|71439462|gb|DR820512.1|DR820512
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGAAG                       
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACAC---Ggtacataatg ... cattcaga
EST: gi|74243877|gb|DT651791.1|DT651791
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         GCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaagGCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
EST: gi|74238077|gb|DT645991.1|DT645991
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         GCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaagGCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
EST: gi|211157842|gb|FL370480.1|FL370480
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|211157842|gb|FL370480.1|FL370480
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|211157842|gb|FL370480.1|FL370480
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|148973713|gb|EE024841.2|EE024841
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         GCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaagGCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
EST: gi|71439479|gb|DR820529.1|DR820529
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGAAG                       
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACAC---Ggtacataatg ... cattcaga
EST: gi|31353283|gb|CD437640.1|CD437640
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGAAG                       
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACAC---Ggtacataatg ... cattcaga
EST: gi|211431782|gb|FL408913.1|FL408913
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         GCCATGCAGACCCCGCCTCACTATCCCATGTCAGGGGGTTACATGGGCCCT
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaagGCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
EST: gi|37418046|gb|CF646683.1|CF646683
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|37418046|gb|CF646683.1|CF646683
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|37418046|gb|CF646683.1|CF646683
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|211019422|gb|FL374992.1|FL374992
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|211019422|gb|FL374992.1|FL374992
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|211019422|gb|FL374992.1|FL374992
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|37417359|gb|CF646332.1|CF646332
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         GCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaagGCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
EST: gi|87157437|gb|DY402226.1|DY402226
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|87157437|gb|DY402226.1|DY402226
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|87157437|gb|DY402226.1|DY402226
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|211487436|gb|FL377864.1|FL377864
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         GCCATGCAGACCCCGCCTCACTATCCCATGTCAGGGGGTTACATGGGCCCT
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaagGCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
EST: gi|22542254|gb|BU092692.1|BU092692
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|22542254|gb|BU092692.1|BU092692
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|22542254|gb|BU092692.1|BU092692
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|22819789|gb|BU499879.1|BU499879
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|22819789|gb|BU499879.1|BU499879
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|22819789|gb|BU499879.1|BU499879
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         A
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaag-
EST: gi|71313389|gb|DR793245.1|DR793245
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         GCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaagGCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
EST: gi|71446967|gb|DR828017.1|DR828017
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACG                         GCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGgtacataatg ... cattcagaagGCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCT
EST: gi|148947916|gb|EC893413.2|EC893413
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGAAG                       
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACAC---Ggtacataatg ... cattcaga
EST: gi|78115667|gb|DV534055.1|DV534055
EST:     CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACACGAAG                       
genomic: CCACTTGCAACATGCGCAGCTGCAACCAGTCCAGGCCAGCAGATCACAC---Ggtacataatg ... cattcaga


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgcttgcccgcttgcatttatgtcgtgctgctgttgcttgccattcagaagGCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCTGGGACGCCACCATCGATGTACCTTGGTGGGGGCGCTCCCCCATATGGAT
                   atttatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacataatggttttgcctcactttattcttgctgtagattgtttgcttgtcgctttcatggagcgtgtctgtgggtacttttgcttgcccgcttgcatttatgtcgtgctgctgttgcttgccattcagaagGCCATGCAAACCCCGCCTCACTATCCCACGTCAGGGGGTTACATGGGCCCTGGGACGCCACCATCGATGTACCTTGGTGGGGGCGCTCCCCCATATGGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG