1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtattactttgctctagttttatcgttaaatttggtaccagccacaaattttgttggaaaaatgattacgtagattgcctttaaacctgaaccttttgaacttgtgttcttgagggctttgtagGTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATTCAGAGCTATCGTGATCTTCCTCTCATGATAAACCAG
species | Zea mays |
transcript | GRMZM2G107089_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGCATTGGTCACCATTGGAGGAGGAAAAGAACTAGAGGAAAAGCTTGTG GTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATTEST: gi|76018748|gb|DT945918.1|DT945918
genomic: TTGCATTGGTCACCATTGGAGGAGGAAAAGAACTAGAGGAAAAGCTTGTGgtattacttt ... ggctttgtagGTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATT
EST: TTGCATTGGTCACCATTGGAGGAGGAAAAGAACTAGAGGAAAAGCTTGTG GTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATTEST: gi|148950310|gb|EC895869.2|EC895869
genomic: TTGCATTGGTCACCATTGGAGGAGGAAAAGAACTAGAGGAAAAGCTTGTGgtattacttt ... ggctttgtagGTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATT
EST: TTGCATTGGTCACCATTGGAGGAGGAAAAGAACTAGAGGAAAAGCTTGTG GTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATTEST: gi|148962199|gb|EE013014.2|EE013014
genomic: TTGCATTGGTCACCATTGGAGGAGGAAAAGAACTAGAGGAAAAGCTTGTGgtattacttt ... ggctttgtagGTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATT
EST: TTGCATTGGTCACCATTGGAGGAGGAAAAGAACTAGAGGAAAAGCTTGTG GTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATTEST: gi|148944925|gb|EC890084.2|EC890084
genomic: TTGCATTGGTCACCATTGGAGGAGGAAAAGAACTAGAGGAAAAGCTTGTGgtattacttt ... ggctttgtagGTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATT
EST: TTGCATTGGTCACCATTGGAGGAGGAAAAGAACTAGAGGAAAAGCTTGTG GTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATTEST: gi|71760344|gb|DR958281.1|DR958281
genomic: TTGCATTGGTCACCATTGGAGGAGGAAAAGAACTAGAGGAAAAGCTTGTGgtattacttt ... ggctttgtagGTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATT
EST: TTGCATTGGTCACCATTGGAGGAGGAAAAGAACTAGAGGAAAAGCTTGTG GTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATTEST: gi|6194519|gb|AW146623.1|AW146623
genomic: TTGCATTGGTCACCATTGGAGGAGGAAAAGAACTAGAGGAAAAGCTTGTGgtattacttt ... ggctttgtagGTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATT
EST: GAACTAGAGGAAAAGCTTGTG GTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATT
genomic: GAACTAGAGGAAAAGCTTGTGgtattacttt ... ggctttgtagGTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATT
gtagattgcctttaaacctgaaccttttgaacttgtgttcttgagggctttgtagGTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATTCAGAGCTATCGTGATCTTCCTCTCATGATAAACCAG
tttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattactttgctctagttttatcgttaaatttggtaccagccacaaattttgttggaaaaatgattacgtagattgcctttaaacctgaaccttttgaacttgtgttcttgagggctttgtagGTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATTCAGAGCTATCGTGATCTTCCTCTCATGATAAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT