Sequence
atgc intronic sequence ATGC exonic sequencegtgctccaactgtgtactgccgtgtccagttgctggtgtttttttcgtgaccttacttacgattgatttgggctggagCGAACTCTTTCAGGTGGAATACCATGGAGAGGTTCTGGCAACAATGCATCTTCAATTACCTCCGGTGCAACCCAGAAGATCATTATTTTATTCTAACTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G106513_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g38340.1 (Oryza sativa), 3'ss of exon 2
----------------------gtgctccaact--gtgtactgccgtgtccagttgctggtgtttttttcgtgaccttacttac---gattgatttgggctgga-gCGAACTCTTTCAGGTGGAATACCATGGAGAGGTTCTGGCAACAATGCATCTTCAATTACCTCCGGTGCAACCCAGAAGATCATTATTTTATTCTAACTAA-----
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gtttgtgcgcgcgcgcgcgagcgagcgttaatttcctcttctgacactctgcgttgctatcttagtttgcggagcttcatttactcaagctgatatgggctagatattcagGTTGAGAATTGGGACACCATGGAGAGGTTCTGGCAGCAGTGCATTTTCAATTACCTGCGGTGTGATCCGGAGGATCACTATTTTCTGCTCACCGAGAGCC
upper sequence: GRMZM2G106513_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ09569 (Selaginella moellendorffii), 3'ss of exon 2
gtgctccaactgtgtactgccgtgtccagttgctggtgtttttttcgtgaccttacttacgattgatt-tgggctggagCGAACTCTTTCAGGTGGAATACCATGGAGAGGTTCTGGCAACAATGCATCTTCAATTACCTCCGGTGCAACCCAGAAGATCATTATTTTATTCTAACTAA-----
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--gtccttgct-tgcgat-tcttctctacctctctttctctctctcgtga-----ttcatggtttcttcttcgtccagGTGGAT------AACTGGGACGCCATGGAGAGGTTCTGGCAGCAGTGTATCTTCAACTACCTGCGGTGTGATCCCGAGGATCACTACTTCCTCTTGACGGAGAGCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtccagttgctggtgtttttttcgtgaccttacttacgattgatttgggctggagCGAACTCTTTCAGGTGGAATACCATGGAGAGGTTCTGGCAACAATGCATCTTCAATTACCTCCGGTGCAACCCAGAAGATCATTATTTTATTCTAACTAA
tgttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgctccaactgtgtactgccgtgtccagttgctggtgtttttttcgtgaccttacttacgattgatttgggctggagCGAACTCTTTCAGGTGGAATACCATGGAGAGGTTCTGGCAACAATGCATCTTCAATTACCTCCGGTGCAACCCAGAAGATCATTATTTTATTCTAACTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA