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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgcacgtgcatctgttggtttgttcaaattattatttcatcaactgtctgtttgcttgataatgtatatatgtgcttaccggtagacacacatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTGGATGGGCAGCAATTCCAAGTCCTCGAATTGGACCTTGGCTCCGGTTGAT

Basic information

species Zea mays
transcript GRMZM2G106427_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106427_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os09g07320.2 (Oryza sativa), 3'ss of exon 2
atgcacgtgcatctgttggtttgttcaaattattatttcatcaactgtctgtttgcttgataatgtatata-tgtgcttaccggtagaca---cacatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTGGATGGGCAGCAATTCCAAGTCCTCGAATTGGACCTTGGCTCCGGTTGAT
||    ||  || |  |||||  | |    || ||   |||    | |    ||  || ||| |  | ||  |||  ||     | |      | ||  | |||||||||||||||| |  || ||||| || ||||| |||||||| |  || |||||||||||  | || | |||||||||||| || |||||||| |||||
atttgtgtaaat-taatggttcatacttcatagtaccacatg---tattcaattattttatattaaacatggtgtcatttttctttggtgtgtcgcaccttaagGTGTGCCACATCTAAGAGAAGATGAGACGCCACCTCAAGGAGGGAGACCAGGATGGGCAGCTCTGCCCAATCCTCGAATTGGTCCATGGCTCCGTTTGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89764268|gb|DY691136.1|DY691136
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|87155475|gb|DY400264.1|DY400264
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|211222555|gb|FL103716.1|FL103716
EST:     CAAACACACTGCAGTCTCCAAACKTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|40334099|gb|CK368169.1|CK368169
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|31361026|gb|CD445383.1|CD445383
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|71772737|gb|DR970664.1|DR970664
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|60355367|gb|DN222340.1|DN222340
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|211224620|gb|FL103734.1|FL103734
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAG
EST: gi|78085144|gb|DV513537.1|DV513537
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|21331768|gb|BQ487149.1|BQ487149
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|31355615|gb|CD439972.1|CD439972
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|26558980|gb|CA831215.1|CA831215
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|211222554|gb|FL103715.1|FL103715
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|71764615|gb|DR962552.1|DR962552
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|22472874|gb|BU037354.1|BU037354
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|211224624|gb|FL103738.1|FL103738
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTSCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAA
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAA
EST: gi|76283188|gb|DV022756.1|DV022756
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|76282655|gb|DV022223.1|DV022223
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|76017530|gb|DT944700.1|DT944700
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|87156227|gb|DY401016.1|DY401016
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|94478165|gb|EB707123.1|EB707123
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|67011429|gb|CO440178.1|CO440178
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|26558677|gb|CA830912.1|CA830912
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|78082947|gb|DV511340.1|DV511340
EST:     AAACACACTGCAGTCTCCCAACGTCCAGCACTCCCAGTGCATTCCA-TTG                         GTGTGCCACATCTTGA-GGAGGATGAAACCCC
genomic: AAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCAT-CCAATTGgtccgttctt ... acatataaagGTGTGCCACATCT-GAAGGAGGATGAAACCCC
EST: gi|211222552|gb|FL103713.1|FL103713
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCCT
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCC-T
EST: gi|76291547|gb|DV031115.1|DV031115
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|211224613|gb|FL103727.1|FL103727
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|211222557|gb|FL103718.1|FL103718
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|71317703|gb|DR795610.1|DR795610
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|148935625|gb|EC879669.2|EC879669
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|74232848|gb|DT640762.1|DT640762
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|211224614|gb|FL103728.1|FL103728
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGG
EST: gi|76929934|gb|DV172226.1|DV172226
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|149074981|gb|EE163447.2|EE163447
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|22520820|gb|BU079631.1|BU079631
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|211164033|gb|FL240050.1|FL240050
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGAT
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGAT
EST: gi|76280900|gb|DV020468.1|DV020468
EST:     AGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: AGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|101395724|gb|EB819790.1|EB819790
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|211224615|gb|FL103729.1|FL103729
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|71442557|gb|DR823607.1|DR823607
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|211224622|gb|FL103736.1|FL103736
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|101392862|gb|EB818362.1|EB818362
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|74236292|gb|DT644206.1|DT644206
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|101392090|gb|EB817972.1|EB817972
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|76280901|gb|DV020469.1|DV020469
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|50331775|gb|CO526901.1|CO526901
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|101394322|gb|EB819096.1|EB819096
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|78090251|gb|DV518625.1|DV518625
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
EST: gi|148969161|gb|EE019904.2|EE019904
EST:     CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTG                         GTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG
genomic: CAAACACACTGCAGTCTCCAAACGTCCAGCACTCACAGTGCATCCAATTGgtccgttctt ... acatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctgtttgcttgataatgtatatatgtgcttaccggtagacacacatataaagGTGTGCCACATCTGAAGGAGGATGAAACCCCACCCCAAGGAGGAACTCCTGGATGGGCAGCAATTCCAAGTCCTCGAATTGGACCTTGGCTCCGGTTGAT
                            tgcttac  putative branch site (score: 2)
           ttgataatgtatatat  TA-rich tract