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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctatgagtgatatttctgtcgccgccacttgttttcaccagctctggcaagctcatttgttgtttaatatatgagattacaatattgcattgcagGTGGATTTTATACTTCTCGGTGGTGATCTATTCCATGAGAACAAGCCGTCACGCTCAACCCTGGTAAAAACGATTGAGATTCTACGGCGCTACTGCCTAA

Basic information

species Zea mays
transcript GRMZM2G106056_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106056_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g54340.1 (Oryza sativa), 3'ss of exon 3
-----------------------------------gtttctatgagtgatatttctgtcgccgccacttgttttcac---cagctctggcaagctcatttgttgtttaatatatga-gattacaatattgcattgcagGTGGATTTTATACTTCTCGGTGGTGATCTATTCCATGAGAACAAGCCGTCACGCTCAACCCTGGTAAAAACGATTGAGATTCTACGGCGCTACTGCCTAA
                                   | || | |  |  | |||| |    | ||   || | ||       | |  |       | | || |   |||  |||||| |   |  ||| || ||||||||| |||||| | || || |||||||| || |||||||||||||| || ||||| |||||| | || || || ||||||||||||||||| |||||| | |
gtttgtaggagctgcacatttttccattcttttctgcttgtgtt-gcaaaatttattggcctgctcattctgttgggggataaccttctatttatgaattatgaattataatatgatggaaatcatactgaattgcagGTTGATTTTGTGCTACTTGGTGGTGACCTTTTCCATGAGAACAAACCTTCACGTTCAACCTTAGTTAAGACCATTGAGATTCTACGGCGTTACTGCTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211389766|gb|FL034466.1|FL034466
EST:     ATTCCTTTCAAGCATTTGAGGAGATTTGCGCGTTGGCAGATAAAAATAAG                         GTGGATTTTATACTTCTCGGTGGTGATCTATTCCATGAGAACAAGCCGTCT
genomic: ATTCCTTTCAAGCATTTGAGGAGATTTGCGCATTGGCAGATAAAAATAAGgtttctatga ... tgcattgcagGTGGATTTTATACTTCTCGGTGGTGATCTATTCCATGAGAACAAGCCGTCA
EST: gi|211389767|gb|FL034467.1|FL034467
EST:     ATTCCTTTCAAGCATTTGAGGAGATTTGCGCGTTGGCAGATAAAAATAAG                         GTGGATTTTATACTTCTCGGTGGTGATCTATTCCATGAGAACAAGCCGTCT
genomic: ATTCCTTTCAAGCATTTGAGGAGATTTGCGCATTGGCAGATAAAAATAAGgtttctatga ... tgcattgcagGTGGATTTTATACTTCTCGGTGGTGATCTATTCCATGAGAACAAGCCGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctctggcaagctcatttgttgtttaatatatgagattacaatattgcattgcagGTGGATTTTATACTTCTCGGTGGTGATCTATTCCATGAGAACAAGCCGTCACGCTCAACCCTGGTAAAAACGATTGAGATTCTACGGCGCTACTGCCTAA
                     gtttaat  putative branch site (score: 4)
                   ttgtttaatatatgag  TA-rich tract