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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagacttacatatctcctttgatctttttattcttttgatgtttaaacatagaggtgagcatgaaaacgagataaccatatcattccaatttgatggtagGAATGGAGATCATCAAACCAAGGAAGGAATAATGCTGCATATCGGTACAACCGTGAAGGTTTTTATGTTAAGCATGATTCCAGGACCTTCCGTGACGAAG

Basic information

species Zea mays
transcript GRMZM2G105976_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G521085_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g61050.1 (Oryza sativa), 3'ss of exon 11
cagacttacatatctcctttgatctttttattctttt---gatgtttaaaca------tagaggtgagcatgaaaacgagataaccatatcattcc----aatttgatggtagGAATGGAGATCATCAAACCAAGGAAGGAATAATGCTGCATATCGGTACAACCGTGAAGGTTTTTATGTTAAGCATGATTCCAGGACCTTCCGTGACGAAG
              |||||| | | || ||||  ||    ||||||||||||      | || ||     ||| |    |||||| |||| |||||    ||||| ||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||| |||||||||| || | |||||| || |||||||||||||
-------------ttcctttaaaccttctatttattcatggatgtttaaacaagatagtggaagtactgctgacagtaggataacaatataattccttccaatttaatggtagGAATGGAGATCATCAAACCAGGGAAGAAACAATGCTGCATATCGTTACAACCGTGAAGGTATTTATGTTAAACACGGTTCCAGAACATTCCGTGACGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatagaggtgagcatgaaaacgagataaccatatcattccaatttgatggtagGAATGGAGATCATCAAACCAAGGAAGGAATAATGCTGCATATCGGTACAACCGTGAAGGTTTTTATGTTAAGCATGATTCCAGGACCTTCCGTGACGAAG
                                atatcatt  TA-rich tract