1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggacagtcatggaatcattgtggggtggcagagtgtgtgagattggcaggggttggaatgatggcaattttagtatcttttgcttgttcttttgctccagGTGAGGAAGGAGAAGCTAGGGGATCGAATAACTGCTCTCCACCAGCTTGTCTCCCCGTTTGGAAAG
species | Zea mays |
transcript | GRMZM2G105494_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAAGAAGGCTAGGACCCAAGAACCCTCCCCGGCTCAATCTACTGTGAAG GTGAGGAAGGAGAAGCTAGGGGATCGAATAACTGCTCTCCACCAGCTTGTCEST: gi|71435603|gb|DR816653.1|DR816653
genomic: TCAAGAAGGCTAGGACCCAAGAACCCTCCCCGGCTCAATCTACTGTGAAGgtcatccctc ... tttgctccagGTGAGGAAGGAGAAGCTAGGGGATCGAATAACTGCTCTCCACCAGCTTGTC
EST: TCAAGAAGGCTAGGACCCAAGAACCCTCCCCGGCTCAATCTACTGTGAAG GTGAGGAAGGAGAAGCTAGGGGATCGAATAACTGCTCTCCACCAGCTTGTCEST: gi|78112567|gb|DV530961.1|DV530961
genomic: TCAAGAAGGCTAGGACCCAAGAACCCTCCCCGGCTCAATCTACTGTGAAGgtcatccctc ... tttgctccagGTGAGGAAGGAGAAGCTAGGGGATCGAATAACTGCTCTCCACCAGCTTGTC
EST: TCAAGAAGGCTAGGACCCAAGACCCCTCCCCGGCTCAATCTACTGTGAAG GTGAGGAAGGA-AAGCTAGGGGATCGAATAACTGCTCTCCACCAGCTTGTCEST: gi|76929547|gb|DV172057.1|DV172057
genomic: TCAAGAAGGCTAGGACCCAAGAACCCTCCCCGGCTCAATCTACTGTGAAGgtcatccctc ... tttgctccagGTGAGGAAGGAGAAGCTAGGGGATCGAATAACTGCTCTCCACCAGCTTGTC
EST: TCAAGAAGGCTAGGACCCAAGAACCCTCCCCGGCTCAATCTACTGTGAAG GTGAGGAAGGAGAAGCTAGGGGATCGAATAACTGCTCTCCACCAGCTTGTC
genomic: TCAAGAAGGCTAGGACCCAAGAACCCTCCCCGGCTCAATCTACTGTGAAGgtcatccctc ... tttgctccagGTGAGGAAGGAGAAGCTAGGGGATCGAATAACTGCTCTCCACCAGCTTGTC
gcaggggttggaatgatggcaattttagtatcttttgcttgttcttttgctccagGTGAGGAAGGAGAAGCTAGGGGATCGAATAACTGCTCTCCACCAGCTTGTCTCCCCGTTTGGAAAG
tcttttgcttgttctt CT-rich tract
aattttagtatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggacagtcatggaatcattgtggggtggcagagtgtgtgagattggcaggggttggaatgatggcaattttagtatcttttgcttgttcttttgctccagGTGAGGAAGGAGAAGCTAGGGGATCGAATAACTGCTCTCCACCAGCTTGTCTCCCCGTTTGGAAAG
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