Sequence
atgc intronic sequence ATGC exonic sequencegttctaacttcaatgttttgttttgtgttctttgttctttgtgtacactatatcaccaaccatgttccttcctgatatttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G105461_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 3
---gttctaacttcaatgttttgttttg-------tgttctttgttctttgt-gtacactatatcaccaaccatgttccttcctgatatttgg-gcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATATCAG-----------------
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gttgttcttgtttgtcagttggtctttggagtagatgcatgttcttgtttgttgtgcttaaaatatttaatatagactggtggtgaactttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAA
upper sequence: GRMZM2G105461_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA02G33770.1 (Glycine max), 3'ss of exon 3
----------------------------------------gttctaacttcaatgttttgttttgtgttctttgt-tctttgtgtacactatatcaccaaccatgttccttcctgat--atttgg--gcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATATCAG-----------------
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gttgttcttgtttgtcagttgatctttggagtagatgcatgttcttgtttgtcagttgatctttggagtagatgcatgttcttgtttgttatgcttaatatattaatatagactggtgaacttcgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAA
upper sequence: GRMZM2G105461_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT3G57290.1 (Arabidopsis thaliana), 3'ss of exon 3
gttctaacttcaa---tgttttgttttgtgttctttgttctttgtgtacactatatcaccaaccatgttc-cttcctgatatttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATATCAG-----------------
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gttagtatttaaaacttcttctagtttgcgacctttgaaatcaatataga-tgtgagagtatatatgctaactaccatttgttttttcagAGTTTTTCATCGCCGTTAAACCAGGTGCAGAACAGGATTTGGTTGATGCATTGGGGTCTGTATATCTTTTTTAACCATGATAATGGAAGGACACAGATCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttctttgtgtacactatatcaccaaccatgttccttcctgatatttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATATCAG
tcctgat putative branch site (score: 3)
tgatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttctaacttcaatgttttgttttgtgttctttgttctttgtgtacactatatcaccaaccatgttccttcctgatatttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT