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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctgagaaatgtttgtagcagccttgtagactgggggatgattatgtttcagcttaatcatctcatactacctgtcatgttattttgtttatgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTACTATTGAGGACAAGGAGGATTTCACAAATATGGAGAATACACCACCAGT

Basic information

species Zea mays
transcript GRMZM2G105019_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211398161|gb|FL173842.1|FL173842
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAA
EST: gi|67041846|gb|CO468101.1|CO468101
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211024886|gb|FL173871.1|FL173871
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211392922|gb|FL173824.1|FL173824
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTT
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTT
EST: gi|67031272|gb|CO460021.1|CO460021
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211395543|gb|FL173833.1|FL173833
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGG
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGG
EST: gi|149074736|gb|EE163165.2|EE163165
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|31358963|gb|CD443320.1|CD443320
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211392916|gb|FL173818.1|FL173818
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211398165|gb|FL173846.1|FL173846
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|5901292|gb|AW042392.1|AW042392
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211398163|gb|FL173844.1|FL173844
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATTGTTGAGGCTACTGT
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAAT-GTTGAGGCTACTGT
EST: gi|149000611|gb|EE037809.2|EE037809
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|6021590|gb|AW066518.1|AW066518
EST:     CGATTCAATGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211027355|gb|FL173898.1|FL173898
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|60354886|gb|DN221859.1|DN221859
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|148952074|gb|EC897865.2|EC897865
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211024894|gb|FL173879.1|FL173879
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCA
EST: gi|211392914|gb|FL173816.1|FL173816
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|149095998|gb|EE181667.2|EE181667
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211029791|gb|FL173903.1|FL173903
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211029800|gb|FL173912.1|FL173912
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAG
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAG
EST: gi|211029788|gb|FL173900.1|FL173900
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCA
EST: gi|15554147|gb|BI644145.1|BI644145
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|22545963|gb|BU098322.1|BU098322
EST:     CGATTC-AGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|22819579|gb|BU499669.1|BU499669
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211395546|gb|FL173836.1|FL173836
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211392917|gb|FL173819.1|FL173819
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCAC-AGTAAAGAATG
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATG
EST: gi|211024891|gb|FL173876.1|FL173876
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211027346|gb|FL173889.1|FL173889
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCA
EST: gi|211029793|gb|FL173905.1|FL173905
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAA
EST: gi|6056546|gb|AW090936.1|AW090936
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|149014157|gb|EE043702.2|EE043702
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211398167|gb|FL173848.1|FL173848
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211395545|gb|FL173835.1|FL173835
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGC
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGC
EST: gi|211029801|gb|FL173913.1|FL173913
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGA
EST: gi|211398160|gb|FL173841.1|FL173841
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCT
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCT
EST: gi|211022440|gb|FL173865.1|FL173865
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGA-TGTTGAGGCTACTG
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTG
EST: gi|211392921|gb|FL173823.1|FL173823
EST:     GATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTTGAGGCTACTGTGGC
genomic: GATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATC-GCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTT-GAGGCTACTGTGGC
EST: gi|211024898|gb|FL173883.1|FL173883
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCA
EST: gi|211032267|gb|FL173920.1|FL173920
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211027349|gb|FL173892.1|FL173892
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAA-GAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|71429578|gb|DR810628.1|DR810628
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211398171|gb|FL173852.1|FL173852
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATG
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATG
EST: gi|211027344|gb|FL173887.1|FL173887
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGT
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGT
EST: gi|211395538|gb|FL173828.1|FL173828
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         ACGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|148995931|gb|EE035174.2|EE035174
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211398169|gb|FL173850.1|FL173850
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGNRTCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|5932648|gb|AW057009.1|AW057009
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|86467579|gb|DY233949.1|DY233949
EST:     CGATTCAGGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211027350|gb|FL173893.1|FL173893
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGT
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGT
EST: gi|211022436|gb|FL173861.1|FL173861
EST:     CGATTCAAGGGTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCNCTG                         AGGAATCTAGCCAGGCACCA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCA
EST: gi|211395542|gb|FL173832.1|FL173832
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAA
EST: gi|148936646|gb|EC880771.2|EC880771
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTA
EST: gi|211392920|gb|FL173822.1|FL173822
EST:     CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTG                         AGGAATCTAGCCAGGCACCAGT
genomic: CGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 862

TACCAAACTGCAAAGGCTGCTCTTGAGTTGGGTTCTTCTTATGCATCAGGCGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTACTATTGAGGACAAGGAGGATTTCACAAATATGGAGAATACACCACCAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 703

TACCAAACTGCAAAGGCTGCTCTTGAGTTGGGTTCTTCTTATGCATCAGGCGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTACTATTGAGGACAAGGAGGATTTCACAAATATGGAGAATACACCACCAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 946

TACCAAACTGCAAAGGCTGCTCTTGAGTTGGGTTCTTCTTATGCATCAGGCGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTACTATTGAGGACAAGGAGGATTTCACAAATATGGAGAATACACCACCAGT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 572

TACCAAACTGCAAAGGCTGCTCTTGAGTTGGGTTCTTCTTATGCATCAGGCGATTCAAGGTTTGCTCGTCTATTGAAGGAATGTGATGAGCGCATCGCTGgtgagaaaaa ... atgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTACTATTGAGGACAAGGAGGATTTCACAAATATGGAGAATACACCACCAGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcagcttaatcatctcatactacctgtcatgttattttgtttatgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTACTATTGAGGACAAGGAGGATTTCACAAATATGGAGAATACACCACCAGT
      gcttaat  putative branch site (score: 572)
                                              tgtttcc  putative PPT
                                  ttattttgtttatgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cctgagaaatgtttgtagcagccttgtagactgggggatgattatgtttcagcttaatcatctcatactacctgtcatgttattttgtttatgtttccagAGGAATCTAGCCAGGCACCAGTAAAGAATGTTGAGGCTACTGTGGCTGCTACTATTGAGGACAAGGAGGATTTCACAAATATGGAGAATACACCACCAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - -tgtttgt
- - - - - - - - agcagcc
- - - - - - - - - - - - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtta