1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agttttcatgctagtagaatctgatgcgtgcatttttttatttaaaaatatggaacctttgttattgcacccttttgatgagaaaccttgttatgtgcagCCACAGAGAAGCTCAATGCGAGTTGCAGATAAAAAGCGCAGTGCATCTGAAAAGAACTTTAGTCTGGATGTTCTTCGCAAATACTTCTCTGGGAGCCTGA
species | Zea mays |
transcript | GRMZM2G105004_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCAGGATCTATCTTTGGGTGACAAACAAGGAGACAGAGAACCTGACAAG GCACAGAGAAGCTCAATGCGAGTTGCAGAGAAAAAGCGCAGTGCATCTGAAEST: gi|149089647|gb|EE178901.2|EE178901
genomic: TCCAGGATCTATCTTTGGGTGACAAACAAGGAGACAGAGAACCTGACAAGgtgctgcgct ... ttatgtgcagCCACAGAGAAGCTCAATGCGAGTTGCAGATAAAAAGCGCAGTGCATCTGAA
EST: TCCAGGATCTATCTTTGGGTGACAAACAAGGAGACAGAGAACCTGACAAG CCACAGAGAAGCTCAATGCGAGTTGCAGATAAAAAGCGCAGTGCATCTGAAEST: gi|74245012|gb|DT652926.1|DT652926
genomic: TCCAGGATCTATCTTTGGGTGACAAACAAGGAGACAGAGAACCTGACAAGgtgctgcgct ... ttatgtgcagCCACAGAGAAGCTCAATGCGAGTTGCAGATAAAAAGCGCAGTGCATCTGAA
EST: CAAACAAGGAGACAGAGAACCTGACAAG CCACAGAGAAGCTCAATGCGAGTTGCAGATAAAAAGCGCAGTGCATCTGAA
genomic: CAAACAAGGAGACAGAGAACCTGACAAGgtgctgcgct ... ttatgtgcagCCACAGAGAAGCTCAATGCGAGTTGCAGATAAAAAGCGCAGTGCATCTGAA
aaatatggaacctttgttattgcacccttttgatgagaaaccttgttatgtgcagCCACAGAGAAGCTCAATGCGAGTTGCAGATAAAAAGCGCAGTGCATCTGAAAAGAACTTTAGTCTGGATGTTCTTCGCAAATACTTCTCTGGGAGCCTGA
ttttgat putative branch site (score: 4)
ccttgtt putative PPT
tttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttttcatgctagtagaatctgatgcgtgcatttttttatttaaaaatatggaacctttgttattgcacccttttgatgagaaaccttgttatgtgcagCCACAGAGAAGCTCAATGCGAGTTGCAGATAAAAAGCGCAGTGCATCTGAAAAGAACTTTAGTCTGGATGTTCTTCGCAAATACTTCTCTGGGAGCCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - ttcatgc
- - - - - - - - - - ctgatgc
- - - - - - - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - - - - - - -aaaaata