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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctccttgatacttgttttcaaaaaattataacacatttttatatggatatgaatatgaatagttatgcctcaatctcattgcagCCTTTCTGATACTGAATACACCAGCTATGCTTTGTCTGAAGCTGAAAGGTTTCAAGATTCTTATGAGATAATAGCATTGTTCAGAAAAGCTTATGAATCA

Basic information

species Zea mays
transcript GRMZM2G104714_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104714_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g48380.1 (Oryza sativa), 3'ss of exon 7
gtaagctccttgatactt-gttttcaaaaaattataacaca-tttttatatggatatgaatatgaatagttatgcctcaatctcattgcagCCTTTCTGATACTGAATACACCAGCTATGCTTTGTCTGAAGCTGAAAGGTTTCAAGATTCTTATGAGATAATAGCATTGTTCAGAAAAGCTTATGAATCA
||||| || ||||  ||| |||      | ||  ||||  | ||||||||||  ||   ||||       | |||          ||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
gtaagttctttgacccttagttacttttagatgttaacgtaatttttatatgactacttatatctgacactgtgc----------ttgcagCCTTTCTGATACTGAGTATACCAGCTATGCTTTGTCAGAAGCTGAAAGGTTTCAAGATTCCTATGAGATAATTGCATTGTTCAGAAAAGCTTATGAATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacacatttttatatggatatgaatatgaatagttatgcctcaatctcattgcagCCTTTCTGATACTGAATACACCAGCTATGCTTTGTCTGAAGCTGAAAGGTTTCAAGATTCTTATGAGATAATAGCATTGTTCAGAAAAGCTTATGAATCA
 ttataac  putative branch site (score: 2)
                                            tctcatt  putative PPT
     atttttatatggatat  TA-rich tract