1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgaattttttttaatccagaattgtcgcacctactgtccttttttattaaaatcttcagcaaatgtacaagctgttgttgatgcctcggatgcttgtcgaatatgaaaattttgttctctgatgcagGCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG
species | Zea mays |
transcript | GRMZM2G104166_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCACTTCTGTTAACGAGTCAGTCCAATCTGTCGATTTCTTCCTTGGAGAG GCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCTEST: gi|5847057|gb|AW000136.1|AW000136
genomic: CCACTTCTGTTAACGAGTCAGTCCAATCTGTCGATTTCTTCCTTGGAGAGgtatgaattt ... tctgatgcagGCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCT
EST: CCACTTCTGTTAACGAGTCAGTCCAATCTGTCGATTTCTTCCTTGGAGAG GCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCTEST: gi|6095746|gb|AW120413.1|AW120413
genomic: CCACTTCTGTTAACGAGTCAGTCCAATCTGTCGATTTCTTCCTTGGAGAGgtatgaattt ... tctgatgcagGCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCT
EST: CCACTTCTGTTAACGAGTCAGTCCAATCTGTCGATTTCTTCCTTGGAGAG GCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCTEST: gi|211163114|gb|FL067003.1|FL067003
genomic: CCACTTCTGTTAACGAGTCAGTCCAATCTGTCGATTTCTTCCTTGGAGAGgtatgaattt ... tctgatgcagGCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCT
EST: CCACTTCTGTTAACGAGTCAGTCCAATCTGTCGATTTCTTCCTTGGAGAG GCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCTEST: gi|5915494|gb|AW053135.1|AW053135
genomic: CCACTTCTGTTAACGAGTCAGTCCAATCTGTCGATTTCTTCCTTGGAGAGgtatgaattt ... tctgatgcagGCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCT
EST: CCACTTCTGTTAACGAGTCAGTCCAATCTGTCGATTTCTTCCTTGGAGAG GCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCTEST: gi|5895761|gb|AW037007.1|AW037007
genomic: CCACTTCTGTTAACGAGTCAGTCCAATCTGTCGATTTCTTCCTTGGAGAGgtatgaattt ... tctgatgcagGCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCT
EST: CCACTTCTGTTAACGAGTCAGTCCAATCTGTCGATTTCTTCCTTGGAGAG GCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCTEST: gi|211163116|gb|FL067005.1|FL067005
genomic: CCACTTCTGTTAACGAGTCAGTCCAATCTGTCGATTTCTTCCTTGGAGAGgtatgaattt ... tctgatgcagGCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCT
EST: CCACTTCTGTTAACGAGTCAGTCCAATCTGTCGATTTCTTCCTTGGAGAG GCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCT
genomic: CCACTTCTGTTAACGAGTCAGTCCAATCTGTCGATTTCTTCCTTGGAGAGgtatgaattt ... tctgatgcagGCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCT
tgttgttgatgcctcggatgcttgtcgaatatgaaaattttgttctctgatgcagGCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG
ctctgat putative branch site (score: 4)
ttttgttctct CT-rich tract
aatatgaaaattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaattttttttaatccagaattgtcgcacctactgtccttttttattaaaatcttcagcaaatgtacaagctgttgttgatgcctcggatgcttgtcgaatatgaaaattttgttctctgatgcagGCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG