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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtatctcagctagtataccaagaataaataacggaagtcaaaattagttgtttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG

Basic information

species Zea mays
transcript GRMZM2G104017_T04
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
--agtatctcag---ctagtata-ccaagaataaataacggaagtcaaaattagttgtttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG
    || ||  |   | | | |  ||| |  | || ||    ||  ||   | |     || | | | |   |  ||   | | | ||| | | |||    | ||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||| ||||| ||| ||||||| ||||||||
aagctacctgcgaccccattgtgtccaggcctgaacaa--acagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctc----tgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG

upper sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
agtatctcagctagtataccaagaataaata-acggaagtcaaaattagttgt---ttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG
   ||  || |  ||| |  |     | ||| | | |  || | |||| || |      ||   | |   |   | ||  |||| || | ||   | |  ||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||||||||| ||||| ||  |||| |||||||| ||
---attcca-cacgtacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

upper sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
agtatctcagctagtataccaagaataaata-acggaagtcaaaattagttgtttaca--cggtgtgactgaagtttcctctt-tttttattct-----caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG
          |   || |  |     | ||| | | |  || | |||| ||  | ||   | || | | |    | |  |||| | ||| || |     || |  ||||||||||| || ||||||||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||| ||||| ||  |||| |||||||| ||
---------acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

upper sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 3
agtatctcagctagtataccaagaataaataacggaagtcaaaattagttgtttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG
         | | ||||| ||  |             |||   |||  || |||  |   |   | ||   |||||     |    | ||      |||||||||||  | || ||||||||||||||||| || ||||| || || ||||| || ||||| || || ||||| || || ||| ||||||| ||||||||
---------gtttgtatatcaccatct----------gtcttgattcattcttt-tataatcacattgttctttccctgaatcaattccttttaaaacagGTATTGTATTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCTGGTCG

upper sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
agtatctcagctagtataccaagaataaataacggaagtcaaaattagttgtttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG
         | | ||||         |  |     || ||| | ||  ||||   |||  |||   |    |  |    |    || | ||     |||||||||||| | || ||||| |||||||| || || |||||||| || ||||| || ||||| || |||||||| ||||| ||| ||||||||||||| ||
---------gtttgtat-ttgtatccatctgtttcaattcatagtt--ttgtcatcacattgttctt----tccctgaatcaaatactttctgaa-acagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG

upper sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
agtatctcagctagtataccaagaataaataacggaagtcaaaattagttgtttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG
         | | |||    |     |  |  |  || |||    |   | || |||  ||   |     |  ||   | |||||      |||   ||||||||||| | || ||||||||||||||||| || |||||||| || ||||| || ||||| || |||||||| ||||| ||| ||||||||||||| ||
---------gtttgtac-ttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttg-----aat---cagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG

upper sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT3G18780.1 (Arabidopsis thaliana), 3'ss of exon 2
agtatctcagctagtataccaagaataaataacggaagtcaaaattagttgtttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG
         | ||||| |           |       ||  | | |  ||| | |       |   |||| |   ||||  || | ||| || |  ||||||||||| || ||||||||||||||||||   || |||||||| || || || || |   | ||||||||||| || || ||||| || |||||||| ||
---------gttagtacattttaggcttttt------gtttatactcattgatcat------tatttgaactgagctctgattatcttc-cattgaacagGTATTGTGCTGGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGTTTCTCTCTTCCTCATGCCATCCTCCGTCTTGACCTTGCTGGACG

upper sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
agtatctcagctagtataccaagaataaataacggaagtcaaaattagttgtttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG
      | || |  || ||    || |   ||         | ||||  |  ||||  |   | ||| ||  |   ||| ||||| |         ||||||||||| |||||||||||||||||||||   || |||||||| || || || || ||||| |||||||||||||| || ||||| |||||||| |||||
-----gttagttctta-actctaaacatccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgta--------acagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG

upper sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 4
agtatctcagctagtataccaagaataaataacggaagtcaaaattagttgtttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG
         | | ||||   ||   |     |  | | |    |||  ||  ||    | ||| | || ||  |    | |   |     |  |    ||||||||| || |||||||||||||||||||| || |||||||| ||||||||||| ||||| ||||| |||||||| || ||||| || |||||||| ||
---------gttcgtattaaaatctttttggattggaattttcatt--tttcttttctgttgttagtgtagcctgagttctaacttgctcctttgactagGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTGCCAATTTATGAAGGTTATGCACTTCCCCATGCTATCCTTCGTCTTGACCTTGCTGGACG

upper sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 2
-agtatctcagctagtataccaagaataaataacggaagtcaaaattagttgtttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG
 | | ||     |  | | |  || ||   |||| |  | | |   |  || ||  |  | | |   | |  ||| ||    |||| |  |   |  | |||||||||  | ||||||||||||||||| |||||||| ||||| || |||||||||||||| ||||| ||||| || || ||  | || |||||||||||
aaatttcaagaattttttcctcagtattggtaactgccgactatgatt-ttcttatcctgttctttgttatatttactgaagttttttggtgtgtgaaaagGTATTGTCTTGGATTCTGGTGATGGTGTCAGCCATACAGTGCCAATCTATGAAGGATATGCTCTTCCACATGCAATCCTTCGATTAGACCTTGCTGGTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60358970|gb|DN225943.1|DN225943
EST:     AGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: AGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|211469314|gb|FL184442.1|FL184442
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|148962309|gb|EE013139.2|EE013139
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|149097364|gb|EE183207.2|EE183207
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|60358575|gb|DN225548.1|DN225548
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|149087628|gb|EE177018.2|EE177018
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|149017500|gb|EE045696.2|EE045696
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|31358965|gb|CD443322.1|CD443322
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|67041579|gb|CO467834.1|CO467834
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|29167959|gb|CB411219.1|CB411219
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|61117776|gb|DN558737.1|DN558737
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|31355715|gb|CD440072.1|CD440072
EST:     GTTGCAATTCAAGCAGTCCTGTCACTCCT-TGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTCTG
genomic: GTTGCAATTCAAGCAGTCCTGTCACT-CTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|211471835|gb|FL184451.1|FL184451
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|211537825|gb|FL109199.1|FL109199
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|60341376|gb|DN208349.1|DN208349
EST:     AGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: AGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|211534820|gb|FL109189.1|FL109189
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTTGATGGTGTGAGCCATACTGTGCCCATTTAT
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGT-GATGGTGTGAGCCATACTGTGCCCATTTAT
EST: gi|20811269|gb|BQ295747.1|BQ295747
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATT
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|463304|gb|T18271.1|T18271
EST:     GCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: GCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|30087681|gb|CB885887.1|CB885887
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|149080410|gb|EE169431.2|EE169431
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|61117775|gb|DN558736.1|DN558736
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|87153890|gb|DY398679.1|DY398679
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|31353858|gb|CD438215.1|CD438215
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|149082827|gb|EE172052.2|EE172052
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
EST: gi|149013960|gb|EE043464.2|EE043464
EST:     CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTG                         GTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttgtttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG
                          tttcctctttttttat  CT-rich tract
                                 tttttttattctcaat  TA-rich tract