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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttccccccttgcccctgattatcaatatggaatatacatgttcttgtgagaataggaatctcagcatgattataagtcatctcctatctctttctgcagGGATTTAAGTAATAACAACTTGAGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATG

Basic information

species Zea mays
transcript GRMZM2G103033_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G103033_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g07130.1 (Oryza sativa), 3'ss of exon 3
tttccccccttgcccctgattatcaatatggaata--tacatgttcttgtgagaataggaatctcagcatgattataagtcatctcctatctctttctgcagGGATTTAAGTAATAACAACTTGAGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATG
    | || ||||    |  |    | ||  ||    || ||| |  |      | |  |         ||||| ||| |  ||  || | |||||||| ||||||||||||||||||||| ||| ||||   ||||| ||  |||| |  ||||| ||||| |||||||||||
-acactcctttgcagtagtatggtgagatataactgctagatgcttgtagagtgacataagggaacttttgattgtaactagtcctct-tttctttctgtagGGATTTAAGTAATAACAACCTGATTGGTCAAATACCTCCCCAAGTCAGCAATCTATCCAAGCTGGAAACATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37425181|gb|CF650327.1|CF650327
EST:     ATCTCGGCGATCCCGCGGGAGCTATTCAATTTGACAGAACTGGTCTCTCT                         GGATTTAAGTAATAACAACTTGAGTGGTTCGACACCCCCGGAAGTTATTAA
genomic: ATCTCGGCGATCCCGCGGGAGCTATTCAATTTGACAGAACTGGTCTCTCTgtgagttttt ... ctttctgcagGGATTTAAGTAATAACAACTTGAGTGGTTCGATACCCCCGGAAGTTATTAA
EST: gi|211265619|gb|FL356060.1|FL356060
EST:     ATCTCGGCGATCCCGCGGGAGCTATTCAATTTGACAGAACTGGTCTCTCT                         GGATTTAAGTAATAACAACTTGAGTGGTTCGATACCCCCG
genomic: ATCTCGGCGATCCCGCGGGAGCTATTCAATTTGACAGAACTGGTCTCTCTgtgagttttt ... ctttctgcagGGATTTAAGTAATAACAACTTGAGTGGTTCGATACCCCCG
EST: gi|211178693|gb|FL329875.1|FL329875
EST:     ATCTCGGCGATCCCGCGGGAGCTATTCAATTTGACAGAACTGGTCTCTCT                         GGATTTAAGTAATAACAACTTGAGTGGTTCGATACCCCCGGAAGTTATTAA
genomic: ATCTCGGCGATCCCGCGGGAGCTATTCAATTTGACAGAACTGGTCTCTCTgtgagttttt ... ctttctgcagGGATTTAAGTAATAACAACTTGAGTGGTTCGATACCCCCGGAAGTTATTAA
EST: gi|211413975|gb|FL312351.1|FL312351
EST:     TCTCGGCGATCCCGCGGGAGCTATTCAATTTGACAGAACTGGGTCTNTCT                         GGATTTAAGTAATAACAACTTGAGTGGGTTCG
genomic: TCTCGGCGATCCCGCGGGAGCTATTCAATTTGACAGAACTGG-TCTCTCTgtgagttttt ... ctttctgcagGGATTTAAGTAATAACAACTTGAGTGG-TTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgagaataggaatctcagcatgattataagtcatctcctatctctttctgcagGGATTTAAGTAATAACAACTTGAGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATG
                                tcatctcctatctctt  CT-rich tract
                     atgattataa  TA-rich tract