Sequence
atgc intronic sequence ATGC exonic sequencegtcaataactaagtaaattggtttcgcctcttatgttgaaatagattcttgaacttgtaaaatttcaacaactaatcattatatattattcattgatttatttacgatattgatattacaacttacaacaataactgttgatctctagGCTTTTTGTGTCTAAAACATTGGAAGTGCAAAGTCAAGGCTCACTATGTGTGTAGACGATATCAAGGAGTTAAAATGTTCAGAAGATAGACCTATGTTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G101662_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g55200.2 (Oryza sativa), 3'ss of exon 3
gtcaataactaagtaaattggtttc-gcctcttatgttgaaatagattcttgaacttgtaaaatttcaaca-actaatcattatatattattcattgatttatttacgatattgatattacaacttacaacaataactgttg-atctctagGCTTTTTGTGTCTAAAACATTGGAAGTGCAAAGTCAAGGCTCACTATGTGTGTAGACGATATCAAG---GAGTTAAAATGTTCAGAAGATAGACCTATGTTCA
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gtcagttaccaaatcaactcccataagcttcttactctga----gcttcttttacctttgaaatttgcatatatccttcatcctctggtctgtattaatttattaatgctctatatattttaaca-atacctctgacttttacatatccagGCTTTTCGCGCACAGAACATTGAAAGTGCAAAGTCAAGGCTCAGTATGTGTGCAGAAGACATCAGGGAAGAGTTGAAATCTAAAGAAGACA-ACCAAGAAC--
upper sequence: GRMZM2G101662_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g01420.3 (Oryza sativa), 3'ss of exon 3
gtcaataactaagtaaattggtttcgcctcttatgttgaaatagattcttgaacttgtaaaatttcaaca-actaatcattatatattattcattgatttatttacgatattgatat---tacaacttacaacaataactgttg-atctctagGCTTTTTGTGTCTAAAACATTGGAAGTGCAAAGTCAAGGCTCACTATGTGTGTAGACGATATCAAGGAG---TTAAAATGTTCAGAAGATAGACCTATGTTCA
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-------------------------gtcagttacgct----cagcttcttttacctttgaaatttgcatatatccttcatcctctgctctgtattaatttattaatgctctctatatatattttgataatacctctgacttttacatatccagGCCTTTCGCGCACAGAACATTGAAAGTGCAAAGTCAAGGCTCAGTATGTGTGCACAAGACATCAGGGAAGAATTGAAATCTAAACAAGACA-ACCAAGAAC-- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatttatttacgatattgatattacaacttacaacaataactgttgatctctagGCTTTTTGTGTCTAAAACATTGGAAGTGCAAAGTCAAGGCTCACTATGTGTGTAGACGATATCAAGGAGTTAAAATGTTCAGAAGATAGACCTATGTTCA
tctct CT-rich tract
atattgatattacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcaataactaagtaaattggtttcgcctcttatgttgaaatagattcttgaacttgtaaaatttcaacaactaatcattatatattattcattgatttatttacgatattgatattacaacttacaacaataactgttgatctctagGCTTTTTGTGTCTAAAACATTGGAAGTGCAAAGTCAAGGCTCACTATGTGTGTAGACGATATCAAGGAGTTAAAATGTTCAGAAGATAGACCTATGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG