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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagtctatgctgttgttgtagtagttccattgatagctgggaagtagcttgatccttggttggcctctttatgagatgaggatatggtgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA

Basic information

species Zea mays
transcript GRMZM2G101480_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g27850.2 (Oryza sativa), 3'ss of exon 3
----------aaagtctatgctgttg----ttgtagtagttccattgatagctggga-agtagcttgatccttggttggcctctttatgagatgaggatatggtgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA
           ||   ||   | ||     ||      ||| |||| |    |   | ||   || |  | |    |  |||     | | ||  || | || | | ||   |||||||||||||||||||| ||||||||||||||||| |||||||| || || ||||| |||||||||||||| || ||||| || ||||| || ||||| |
gtgccctgtccaaccatacaattttagaatttcctagcgttacattaacttttaccacagccactcgcacatacactaaccttcaactaaaatatgg-tgtgttttgcaa-acagATGATCAATGAGAAGCCCCAGGTGATCCAGGAGTACGAGTCAGGTAAAGCTATTCCGAACCAGCAGATCATCGGGAAGCTTGAAAGGGCTCTTGGAACAA

upper sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA06G42890.1 (Glycine max), 3'ss of exon 3
aaagtctatgctgttgttgtagtagttccattgatagctgggaagtagcttgatccttggttggcctctttatgagatgaggatatggtgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA
        |  || |   || ||| |   || | |  ||    | |  | | ||   |  || | |  | |    |||| | ||    ||||  |||||| |||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| ||||||||||| ||| ||||| | || || || || ||| | |
-------gtattgct--cgtcgta-tattatcggt--ctctttattttccttattagtatttaggcattatcaatgatgtgcat----tgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA

upper sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA12G15420.1 (Glycine max), 3'ss of exon 3
-----aaagtctatgctgttg--ttgtagtagttccattgatagctgggaagtagcttgatccttggttggcctctttatgagatgag-gatatgg--tgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA
         |||   |||| |  || |  |   |  |||  |   |          ||  |       | |  | |      ||| |  ||| ||   ||||  |||||| |||||||||||||||| || |||||||||||||| |||||||| ||||| ||||| ||||||||||| ||||| ||| | || ||||| || ||| | |
gtattgctttcttctctgtagattttttttgaatatattattcattattggtctcttttttttcctactagtatttaggcatgatcaatgatgtgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTACGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTGGGAAGTTGGAAAGGGCTCTTGGAGCAA

upper sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA06G42900.1 (Glycine max), 3'ss of exon 3
aaagtctatgctgttgttgtagtagttccattgatagctgggaagtagcttgatccttg--gttggcctctttatgagatgag-gatatgg--tgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA
    |   |     |   |||| | |    || |||  |      |  ||| ||  ||    || ||   |       || |  ||  ||   ||||  |||||| |||||||||||||||| || |||||||||||||| |||||||| ||||| ||||| ||||||||||| ||||||||| | || || ||||| ||| | |
-gtattactctcccttcagtagaattatttttaatatatcatcgatctctttatttttcttattagcaattaggcattatcaatgacgtgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTACGAGTCAGGAAAGGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAAAGAGCCCTTGGAGCTA

upper sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT2G42680.1 (Arabidopsis thaliana), 3'ss of exon 3
aaagtctatgctgttgttgtagtagttccattgatagctgggaagtagcttgatccttggttggcctctttatgagatgaggatatggtgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA
      |||  | |  || |      || ||   |  ||    | || | |  |   |   | |  || | |  |  ||    | |    ||   || |||| ||||||||||||||||| ||||| || ||||||||||| ||||| || || ||||||||||| ||| ||   ||||| ||||| || || ||| | |
-----gtatattatccttct-----ctctatatgtcccttattattaccctattttgtaactcggttcatgacaaagtgtt--tgtttctttttgtgtagATCATCAATGAGAAGCCACAAGTGATTCAAGAGTATGAGTCTGGCAAAGCTATACCCAACCAGCAAATCCTTTCTAAGCTGGAGAGAGCGCTTGGAGCTA

upper sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT3G58680.1 (Arabidopsis thaliana), 3'ss of exon 3
aaagtctatgctgttgttgtagtagttccattgatagctgggaagtagcttgatccttggttggcctcttta------tgagatgaggatatggtgttca---ttgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA
                     ||| || ||||  |  |||  |  |  ||   || ||   || | |   |       |||  | |   |||||  ||      || || ||||||||||||||||||| |||||||| || || ||||| || || |||||||| || || |||||| ||   ||||| |||||||| || ||  | |
---------------------gtactttcatttttctctgt-atctttctctttcttttactgtctttcgtcagtaattgaattcattgtatgggttttgattctgtagCTGATCAATGAGAAGCCACAAGTGATCCAAGAATACGAGTCTGGGAAAGCAATTCCGAATCAACAGATCCTTTCAAAGCTGGAGAGGGCACTTGGTGCTA

upper sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv19s0014g01260.t01 (Vitis vinifera), 3'ss of exon 3
aaagtctatgctgttgttgtagtagttccattgatagctgggaagtagcttgatccttggttggcctctttatgagatgaggatatggtgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA
    ||| | ||  | ||      | ||  ||  ||| | | |  ||   | ||      |||  |               | | |  | ||  ||||||||||| ||||||||||| || ||||| || |||||||||||||| || || ||||| || || ||||| ||   ||| || || ||||| || ||   ||
-gtatctctccttctttttgtccggctctgttcctagttcgtacttaatctaatatcactttgatc---------------gttgttatatt--ttgcagATGATTAATGAGAAGCCCCAAGTGATACAAGAGTATGAGTCAGGAAAAGCCATTCCAAATCAACAGATAATCACCAAACTGGAAAGGGCTCTTGGTGTGA

upper sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 3
lower sequence: EDP07421 (Chlamydomonas reinhardtii), 3'ss of exon 4
--aaagtctatgctgttgttgtagtagttccat-tgatagctgggaagtagcttgatccttggttggcctctttatgagatgaggatatggtgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA
  |       |  |   | | | |     | ||     | |   | | |      || | |||    || |||     | |           |  |    |||   ||||| |||||||| ||||||||||||||||| |||   |||||||| || |||||||  ||| |  |    |||||     | || || ||   | 
taattactggtagtaaagctttcgcgccgcaatgccgcaacgatgtactcagcacatgcctggaaaaccccttct---gctccctgcgccccgcaccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCCATCCCCAACCCCCAGGTGCTCTCGAAGCTGTCCCGTGCGCTCGGCGTGG

upper sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S35_215V6.1 (Physcomitrella patens), 3'ss of exon 4
----------------------------------------------------------------------aaagtct-atgct-gttgttgtag----tagttccattgatagctgggaagta-gcttgatccttgg--ttggcctctttatgagatga-ggatatggtgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA
                                                                        | ||| || |  ||||| ||      | | |   ||  ||  || | ||   || | |  |  |   ||||      |   || | |  | |||  | ||  |||||| | || ||||| ||||||||  |  | || ||||| |||||||| || |||||||||||||| ||||||||    ||  | ||  | |  || || ||||
gttttcccgcacttcttttatacaatcaaattgttggcagtatagaattcgcaatatttgacaccaggacggaatctgataccagttgtagtcacttctgggtattttattaagtgtgcagcgtgcattacacaggcatttggtggtcctcgaagcttacagttatcttttttcttgcagCTCATAAATGAAAAGCCACAAATTGTACAAGAGTACGAGTCAGGGAAAGCAATTCCCAACCAACAGATCATATCGAAATTGGAACGTGTGCTTGGTACGA

upper sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ33541 (Selaginella moellendorffii), 3'ss of exon 3
aaagtctatgctgttgttgtagtagttccattgatagctgggaagtagcttgatccttggttggcctctttatgagatgaggatatggtgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA
                        |||    |||| | |     |    ||  |  |||| ||   | |||      |  |       || |   | ||| ||||||| |||||||| ||||| ||||| |||||||| || || || || || |||||||||||||||||   |||||||||| | || |||||| | |
------------------------gtttggatgattgattctttggttttttctttttggctgatttgttttccttgttggt-----ttgcttggtccagCTGATCAACGAGAAGCCTCAGGTCATCCAAGAGTATGAATCGGGAAAAGCCATCCCCAACCAGCAGATCATCTCCAAGCTCGAGCGCGCGCTGGGAGCCA

upper sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ36890 (Selaginella moellendorffii), 3'ss of exon 3
aaagtctatgctgttgttgtagtagttccattgatagctgggaagtagcttgatccttggttggcctctttatgagatgaggatatggtgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA
                      | |    ||||||   | ||  ||  |||     |||| ||   | |||      |  |       || |   | ||| ||||||| |||||||| ||||| ||||| |||||||| || || || || || |||||||||||||| ||   |||||||||| | || |||||| | |
--------------------gtttggatgattgattctttggttgtgtctt----tttggctgatttgttttccttgttggt-----ttgcttggtccagCTGATCAACGAGAAGCCTCAGGTCATCCAAGAGTATGAATCTGGAAAAGCCATCCCCAACCAGCAGATAATCTCCAAGCTCGAGCGCGCGCTGGGAGCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211102751|gb|FL409166.1|FL409166
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|71595755|gb|DR906506.1|DR906506
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|31558212|gb|CD527424.1|CD527424
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|113701251|gb|EE678755.1|EE678755
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|31362533|gb|CD446890.1|CD446890
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|148943030|gb|EC888080.2|EC888080
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|18176992|gb|BM378202.1|BM378202
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|13198703|gb|BG354505.1|BG354505
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|113701846|gb|EE679350.1|EE679350
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|60356188|gb|DN223161.1|DN223161
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|148938265|gb|EC882560.2|EC882560
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|30087746|gb|CB885952.1|CB885952
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGCGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|60340588|gb|DN207561.1|DN207561
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|110200662|gb|EC882559.1|EC882559
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|71306599|gb|DR789460.1|DR789460
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|78025685|gb|DV494072.1|DV494072
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|67010822|gb|CO439571.1|CO439571
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|74035357|gb|DT535846.1|DT535846
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGTCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|211169505|gb|FL157588.1|FL157588
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|78025602|gb|DV493989.1|DV493989
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|67024898|gb|CO453647.1|CO453647
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|32923241|gb|CF028053.1|CF028053
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|60338996|gb|DN205969.1|DN205969
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|60349014|gb|DN215987.1|DN215987
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|32921664|gb|CF026476.1|CF026476
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|60350229|gb|DN217202.1|DN217202
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|71431138|gb|DR812188.1|DR812188
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|67019598|gb|CO448347.1|CO448347
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|51592532|gb|CV071678.1|CV071678
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGGGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|8577422|gb|BE130059.1|BE130059
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|60358790|gb|DN225763.1|DN225763
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|71306597|gb|DR789459.1|DR789459
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|32921064|gb|CF025876.1|CF025876
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|67021700|gb|CO450449.1|CO450449
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|211169503|gb|FL157586.1|FL157586
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|74035245|gb|DT535734.1|DT535734
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGGAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|21760114|gb|BQ635655.1|BQ635655
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|211508672|gb|FL378338.1|FL378338
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGT
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGT
EST: gi|12971089|gb|BG267309.1|BG267309
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|5108299|gb|AI740012.1|AI740012
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|91868112|gb|EB399922.1|EB399922
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|13558840|gb|BG550195.1|BG550195
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|211134616|gb|FL369498.1|FL369498
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAA
EST: gi|16927526|gb|BM080595.1|BM080595
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|31349676|gb|CD434033.1|CD434033
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|211221428|gb|FL386095.1|FL386095
EST:     CATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTTCAG                         ATGATCAATGA
genomic: CATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCT-CAGgtatttctgt ... ttcattgcagATGATCAATGA
EST: gi|211089795|gb|FL379373.1|FL379373
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|60342198|gb|DN209171.1|DN209171
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|211169506|gb|FL157589.1|FL157589
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|32915336|gb|CF020148.1|CF020148
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCTCAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|9952825|gb|BE639408.1|BE639408
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|6342630|gb|AW165454.1|AW165454
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|31250133|gb|CD219157.1|CD219157
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|60340907|gb|DN207880.1|DN207880
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|37393065|gb|CF633789.1|CF633789
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|14701255|gb|BI233673.1|BI233673
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAG
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAG
EST: gi|60347583|gb|DN214556.1|DN214556
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|32920285|gb|CF025097.1|CF025097
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|76021145|gb|DT948315.1|DT948315
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|5706204|gb|AI941980.1|AI941980
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAA
EST: gi|67014211|gb|CO442960.1|CO442960
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|18179932|gb|BM381142.1|BM381142
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|67012987|gb|CO441736.1|CO441736
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|211089947|gb|FL388097.1|FL388097
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|211171178|gb|FL157594.1|FL157594
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|67030264|gb|CO459013.1|CO459013
EST:     TCATGCAAGCAAGGCTAGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGTAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|211365691|gb|FL375168.1|FL375168
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAAGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|18180789|gb|BM381999.1|BM381999
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|60343038|gb|DN210011.1|DN210011
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|31558213|gb|CD527425.1|CD527425
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|134768994|gb|DY742729.1|DY742729
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAGTGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|30087745|gb|CB885951.1|CB885951
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGAAAAAAGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|211171182|gb|FL157598.1|FL157598
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|211273072|gb|FL480779.1|FL480779
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|76021146|gb|DT948316.1|DT948316
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
EST: gi|14203457|gb|BG837134.1|BG837134
EST:     TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG                         ATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA
genomic: TCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 708

ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1270

ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1157

ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 950

ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAGgtatttctgt ... ttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcttgatccttggttggcctctttatgagatgaggatatggtgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA
  gcttgat  putative branch site (score: 950)
                     tctttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaagtctatgctgttgttgtagtagttccattgatagctgggaagtagcttgatccttggttggcctctttatgagatgaggatatggtgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - -gctgttg
- - - - - - - - - - - - - - - - - -agctggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggttg