1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactttcaatagacaactcttttacttatttatttggtgtttattttgatagattagttcctagtacttacgatctagtccacggaaattctgaacgcaaagGTAAAGAAGCTGCGGAAGAAACTCGCCCAGGAGGTGAAGCGGCGGGAGGAGCTGTCGCTGGTGCTGAAGCAGAAGGTTTATTATGATATTGCGCGGGGGC
species | Zea mays |
transcript | GRMZM2G101412_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTCGATCCGGATTCGCCGCGAGGCTGAGCCCGTCGAGCTCGTTCTGGCG GTAAAGAAGCTGCGGAAGACACTCGCCCAGGAGGTGAAGCGGCGGGAGGAGEST: gi|149070871|gb|EE159279.2|EE159279
genomic: AGTCGATCCGGATTCGCCGCGAGGCTGAGCCCGTCGAGCTCGTTCTGGCGgtactttcaa ... gaacgcaaagGTAAAGAAGCTGCGGAAGAAACTCGCCCAGGAGGTGAAGCGGCGGGAGGAG
EST: AGTCGATCCGGATTCGCCGCGAGGCTGAGCCCGTCGAGCTCGTTCTGGCG GTAAAGAAGCTGCGGAAGAAACTCGCCCAGGAGGTGAAGCGGCGGGAGGAG
genomic: AGTCGATCCGGATTCGCCGCGAGGCTGAGCCCGTCGAGCTCGTTCTGGCGgtactttcaa ... gaacgcaaagGTAAAGAAGCTGCGGAAGAAACTCGCCCAGGAGGTGAAGCGGCGGGAGGAG
gatagattagttcctagtacttacgatctagtccacggaaattctgaacgcaaagGTAAAGAAGCTGCGGAAGAAACTCGCCCAGGAGGTGAAGCGGCGGGAGGAGCTGTCGCTGGTGCTGAAGCAGAAGGTTTATTATGATATTGCGCGGGGGC
tacttac putative branch site (score: 1)
attagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttcaatagacaactcttttacttatttatttggtgtttattttgatagattagttcctagtacttacgatctagtccacggaaattctgaacgcaaagGTAAAGAAGCTGCGGAAGAAACTCGCCCAGGAGGTGAAGCGGCGGGAGGAGCTGTCGCTGGTGCTGAAGCAGAAGGTTTATTATGATATTGCGCGGGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC