Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgttttcctgactgcattttctttgtagttatggtgacaccacattctaaaatttatagttgcttgttcactaaccccaacatgtttaactgaacttttgcagAATGCTAAACATGGTAACAATTCATTTAGAATCCGCTTAACATATACTCATGGTGATGCTTCACAAAAGCTTCATAGTTTATTGCCAAATGAGCACAGCC

Basic information

species Zea mays
transcript GRMZM2G101383_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101383_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g47380.1 (Oryza sativa), 3'ss of exon 3
gtatgtgttttcctgactgcattttctttgtagttatggtgacaccacattctaaaatttatagttgcttgttcactaaccccaacatgtttaactgaacttttgcagAATGCTAAACATGGTAACAATTCATTTAGAATCCGCTTAACATATACTCATGGTGATGCTTCACAAAAGCTTCATAGTTTATTGCCAAATGAGCACAGCC
                  | |  | | || |   | || | | | |   | || ||||  |   ||||||||| ||| | | |||   | || ||| |  |  |||||||||  ||||||||||| ||||||||| |||| |||||||| |||||||||| ||| | ||||||||||||||  ||  |  |||||||||| |   | |
------------------gtaaatgcctttt---tctgataatatc---tcctgaaatcaagcattgcttgtttacttatctcaaaccggttgactaatttcgtgcagAATGTGAAACATGGTAATAATTCATTTCGAATTCGCTTAACTTATACTCATGATGAAGGTTCACAAAAGCTTCTAAGGCTTCTGCCAAATGACCGTGGTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934800|gb|CF039612.1|CF039612
EST:     TGAAGGAAGCCTTGCGACTTTTGATAGCACCATCACTCGAGAAACTAATG                         AATGCTAAACATGGTAACAATTCATTTAGAATCCGCTTAACATATACTCAT
genomic: TGAAGGAAGCCTTGCGACTTTTGATAGCACCATCACTCGAGAAACTAATGgtatgtgttt ... acttttgcagAATGCTAAACATGGTAACAATTCATTTAGAATCCGCTTAACATATACTCAT
EST: gi|71432347|gb|DR813397.1|DR813397
EST:     TGAAGGAAGCCTTGCGACTTTTGATAGCACCATCACTCGAGAAACTAATG                         AATGCTAAACATGGTAACAATTCATTTAGAATCCGCTTAACATATACTCAT
genomic: TGAAGGAAGCCTTGCGACTTTTGATAGCACCATCACTCGAGAAACTAATGgtatgtgttt ... acttttgcagAATGCTAAACATGGTAACAATTCATTTAGAATCCGCTTAACATATACTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatttatagttgcttgttcactaaccccaacatgtttaactgaacttttgcagAATGCTAAACATGGTAACAATTCATTTAGAATCCGCTTAACATATACTCATGGTGATGCTTCACAAAAGCTTCATAGTTTATTGCCAAATGAGCACAGCC
                                              cttttgc  CT-rich tract
     ttatagtt  TA-rich tract