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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgcttataagggttatgcttgtatgcaggtccccttcaaagtgctacacattgcaattttaatctttttaagtaaataagagttatgcttgtatgcagATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCATATGATATT

Basic information

species Zea mays
transcript GRMZM2G101250_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101250_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g09860.1 (Oryza sativa), 3'ss of exon 3
gtgatgcttataagggttatgcttgta-tgcaggtccccttcaaagtgctacacattgcaattt-taatctttttaagtaaataagagttatgcttgtatgcagATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCATATGATATT
                        ||  ||||  |           ||  |  || |||||||| |  |  |  ||| | ||  | | | ||| || | |||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||
------------------------gtggtgcaaatattgggaggtttgtgatgcaatgcaatttatctttatcctaattgaacgacattcatgtttatttgcagATGCTCAACTGCCATGCAACTCCATCGCAGAATGCAGAGCGGGAGAGGGCATATGATATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211065118|gb|FL021085.1|FL021085
EST:     ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCGATCAG                         ATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
genomic: ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCGATCAGgtgatgctta ... ttgtatgcagATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
EST: gi|211065127|gb|FL021094.1|FL021094
EST:     ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCGATCAG                         ATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
genomic: ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCGATCAGgtgatgctta ... ttgtatgcagATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
EST: gi|211065129|gb|FL021096.1|FL021096
EST:     CATCAATCCACAAGAGGGCGAAGAACCCAAGATTCTCTGTGCGCAATCAG                         ATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
genomic: CATCAATCCACAAGAGGGCGAAGAACC-AAGATTCTCTGTGCGCGATCAGgtgatgctta ... ttgtatgcagATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
EST: gi|211065122|gb|FL021089.1|FL021089
EST:     ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCAATCAG                         ATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
genomic: ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCGATCAGgtgatgctta ... ttgtatgcagATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
EST: gi|211067851|gb|FL021097.1|FL021097
EST:     ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCGATCAG                         ATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
genomic: ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCGATCAGgtgatgctta ... ttgtatgcagATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
EST: gi|211065128|gb|FL021095.1|FL021095
EST:     ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCAATCAG                         ATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
genomic: ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCGATCAGgtgatgctta ... ttgtatgcagATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
EST: gi|211065119|gb|FL021086.1|FL021086
EST:     ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCAATCAG                         ATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
genomic: ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCGATCAGgtgatgctta ... ttgtatgcagATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
EST: gi|91056341|gb|EB166759.1|EB166759
EST:     ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCGATCAG                         ATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
genomic: ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCGATCAGgtgatgctta ... ttgtatgcagATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
EST: gi|211065125|gb|FL021092.1|FL021092
EST:     ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCAATCAG                         ATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
genomic: ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCGATCAGgtgatgctta ... ttgtatgcagATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
EST: gi|148934269|gb|EC878292.2|EC878292
EST:     ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCGATCAG                         ATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA
genomic: ACATCAATCCACAAGAGGGCGAAGAACCAAGATTCTCTGTGCGCGATCAGgtgatgctta ... ttgtatgcagATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacacattgcaattttaatctttttaagtaaataagagttatgcttgtatgcagATGCTCAACTGCCATGCTACTTCATCGCAGAATGCAGAGCGGGAGAGTGCATATGATATT
             ttttaat  putative branch site (score: 3)
           aattttaatcttttta  TA-rich tract