Sequence
atgc intronic sequence ATGC exonic sequencegtatgattgccttccaatgtctggttgatttgtttttatcatcccttgtgttacctttatgatgttcagcttgcagataacagatgctgttgtagTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G101181_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g46570.1 (Oryza sativa), 3'ss of exon 3
gtatgattgccttccaatgtctggttgatttgtttt-tatcatcccttgtgttacctttatgatgttcagcttgcagataacagatgctgttgtagTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAG
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gtacaactgtatttcaactttttattgcgttgctttgtattatccattgtattaccattacgatcttcagtttccagATAACAGATGCTGTTGTTGTCGCCCGAATATTGAATGCCACACTTGTTGTACCTGAGTTAGATCACCACTCATTCTGGAAGGATGATAG
upper sequence: GRMZM2G101181_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G04720.1 (Glycine max), 3'ss of exon 3
----gtatgattgccttccaatgtctggttgatttg-tttttatcatccctt----------gtgttaccttt----atgatgttcag---cttg--cagataacagatgctgttgtagTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAG
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ggaggctcagattctttctgtagtctaatgaatataatttttctcaattaattaataaacaagttcttcctgtggaaatgacaatcatattcttgtccagATAACAGATGCAGTTGTTGTTGCAAGAATTCTTAATGCTACACTAGTTGTACCTGAGTTGGATCATCAATCTTTTTGGAAAGATGACAG
upper sequence: GRMZM2G101181_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA11G03640.1 (Glycine max), 3'ss of exon 4
------------------------gtatgat-tgccttccaatgtctggttgatttgtttttatcatcccttgtgttacctttatgatgttca-gcttgcagataacagatgctgttgtagTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAG
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gttagtttcctagtcaggctcataattttatatatttttaaaaataaaaatgaacaagttctttctatggaaatgacac--tcatcatgttcctgcatccagATAACAGATGCTGTTGTTGTTGCCCGAATTCTTAATGCCACACTAGTAGTACCGGAGTTGGATCATCATTCTTATTGGAAGGATGACAG
upper sequence: GRMZM2G101181_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA01G41740.1 (Glycine max), 3'ss of exon 3
-------------------------gtatgattgccttccaatgtctggttgatttgtttttatcatcccttgtgttacctttatgatgttca-gcttgcagataacagatgctgttgtagTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAG
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gttctctttcctagtcaggcagatgatttatttatttttaaaaataataatgaataatttcttcctgtggaaatg--acaatcatcatgttcctgcacccagATAACAGATGCTGTTGTTGTTGCACGAATTCTTAATGCCACACTAGTAGTACCTGAGTTGGATCATCATTCTTATTGGAAAGATGACAG
upper sequence: GRMZM2G101181_T03 (Zea mays), 3'ss of exon 3
lower sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------------------------------------------------------------gtatgattgccttccaa---tgtctggttgatttgtttttatcatcccttgtg--ttacctttatgatg----ttcagcttgcagataacagatgctgttgtagTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAG
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gtaagtataaagattcttctgtagctgctacatgttcattaaaacatatatagtggaaggatatgctgttgccgtgtcaacttcataaacatattataaacttgtttcagttatttacttgt-ttatcctttttgcatggaatttacaatccatttcctgcactcagATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32865075|gb|CF004757.1|CF004757EST: GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGG TTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGT
genomic: GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgc ... gctgttgtagTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcccttgtgttacctttatgatgttcagcttgcagataacagatgctgttgtagTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAG
agataac putative branch site (score: 3)
tttatgat TA-rich tract