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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaattatcctagagtttatctggaacgcacacagttgctagcacaaactactcttctgcagttatttttactgatagaagaaatgtttaaaatatttttgcttttgatttcactctagATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAAGGCTTCAATGTTGGGTTCAGGCAATCTGTAAACGTTGGCTACAAATGGG

Basic information

species Zea mays
transcript GRMZM2G101053_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101053_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g72200.1 (Oryza sativa), 3'ss of exon 3
--------------------------gtattaattatcctagagtttatctggaacgcacacagttgcta------gcacaaacta-ctcttctgcagt-tattt--ttactgata------gaagaaatgtttaaa-----atat-ttttgcttttgatttcactctagATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAAGGCTTCAATGTTGGGTTCAGGCAATCTGTAAACGTTGGCTACAAATGGG
                           |   || | | |   | |    | ||||       | ||  |           |||  | || ||||||| | |||||  ||| | ||       |||   |||||| ||     || | |   |||||  ||||  || |||||||||||  | |||||| || | ||||| |||||||||  |||||| || |||||||||||||||||  ||||||||||  | |||||||| || ||||
gtatgaccaaaggcatcaattggattatgggaactttgccctattcctacaggaatctgtgaaattcttgtgttccatgtaaatcatcttttctgcaatatatttatttagttatgaattgtgaactcatgtttgaaccagaatgtgtaaagctttccatttttctttagATGGGATACAGGGATGGTATAGCTGAAGGACAGAAGGACATTGCCCAAGAGGGCTTCAATGTTGGGTTTGGGCAATCTGTGCATGTTGGCTATAAGTGGG

upper sequence: GRMZM2G101053_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g42970.2 (Oryza sativa), 3'ss of exon 2
-------------------------------------------------gtattaattatcctagagtttatctggaacgcacacagttgctagcacaaactact-cttctgcagttattt------ttactgatagaa--gaaatgtttaaaatatttttgcttttgatttcactctagATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAAGGCTTCAATGTTGGGTTCAGGCAATCTGTAAACGTTGGCTACAAATGGG
                                                   |  |||      |    |||| |   |   | |   |   ||   |||  || | |||  |   | ||||       |  || | | |    ||||| |||| || | || |  ||   ||  || |||||||||||  | |||||| || ||||||| |||||||||   ||||| || || ||||||||||||||  ||||||||||  | |||||||| || ||||
gtataaacctaaggcagcaatttgattatgggaactttgccctattcctaaaggaatctgtgaaattgttatgttccatttaaatcatctttactgcaatatatttctttagttatgatttgtgaaacttgtgtttggaccagaatgtgtaaagtaatctttccatt---tttcctttagATGGGATACAGGGATGGTATAGCAGAAGGACAGAAGGACATCGCCCAAGAGGGGTTCAATGTTGGGTTTGGGCAATCTGTGCATGTTGGCTATAAGTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60346950|gb|DN213923.1|DN213923
EST:     CGGATACCTTAGACAGAGAATGGATCCACAGGCAGAGTCAGTTTCAGAAG                         ATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGGATACCTTAGACAGAGAATGGATCCACAGGCAGAGTCAGTTTCAGAAGgtattaatta ... ttcactctagATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAA
EST: gi|74242636|gb|DT650550.1|DT650550
EST:     CGGATACCTTAGACAGAGAATGGATCCACAGGCAGAGTCAGTTTCAGAAG                         ATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGGATACCTTAGACAGAGAATGGATCCACAGGCAGAGTCAGTTTCAGAAGgtattaatta ... ttcactctagATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAA
EST: gi|89760622|gb|DY688955.1|DY688955
EST:     CGGATACCTTAGACAGAGAATGGATCCACAGGCAGAGTCAGTTTCAGAAG                         ATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGGATACCTTAGACAGAGAATGGATCCACAGGCAGAGTCAGTTTCAGAAGgtattaatta ... ttcactctagATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAA
EST: gi|93282479|gb|EB674743.1|EB674743
EST:     CGGATACCTTAGACAGAGAATGGATCCACAGGCAGAGTCAGTTTCAGAAG                         ATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGGATACCTTAGACAGAGAATGGATCCACAGGCAGAGTCAGTTTCAGAAGgtattaatta ... ttcactctagATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAA
EST: gi|149064879|gb|EE286550.2|EE286550
EST:     TCCACAGGCAGAGTCAGTTTCAGAAG                         ATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: TCCACAGGCAGAGTCAGTTTCAGAAGgtattaatta ... ttcactctagATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttactgatagaagaaatgtttaaaatatttttgcttttgatttcactctagATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAAGGCTTCAATGTTGGGTTCAGGCAATCTGTAAACGTTGGCTACAAATGGG
                                            tttcactct  CT-rich tract
                 aaatgtttaaaatatt  TA-rich tract