1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtttcgactgctgctctcacattcacatactgcttttcgccagcatacatgtaccactttctgctgttctgcacaagaactcattgtggaaccacaatcatatcctagtattttttacctgcacggctggatggagaactgacccttttgatcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAATAATAA
species | Zea mays |
transcript | GRMZM2G100652_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAATEST: gi|78076032|gb|DV504466.1|DV504466
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAATEST: gi|87156413|gb|DY401202.1|DY401202
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAATEST: gi|26560034|gb|CA832269.1|CA832269
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAATEST: gi|91869857|gb|EB400576.1|EB400576
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAATEST: gi|148981111|gb|EE027429.2|EE027429
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAATEST: gi|22935606|gb|BU571881.1|BU571881
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAATEST: gi|89762164|gb|DY689888.1|DY689888
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCCAT TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAATEST: gi|86473030|gb|DY239400.1|DY239400
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
tagtattttttacctgcacggctggatggagaactgacccttttgatcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAATAATAA
tttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttcgactgctgctctcacattcacatactgcttttcgccagcatacatgtaccactttctgctgttctgcacaagaactcattgtggaaccacaatcatatcctagtattttttacctgcacggctggatggagaactgacccttttgatcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAATAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG