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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttgtcgatcgaagattttttctgattcactgccaagacttaacattgtttatatctcgctgcttcctattggcttgggcagACATGTCCTATTTCCAAGGATTTTTCTTCTGCCCAGAAGTGGCGTCTTTGCTGCTACACAACTTCTGCGTCTACCACATCAATCCCCAGGGGCATGAGGT

Basic information

species Zea mays
transcript GRMZM2G100102_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100102_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g10740.2 (Oryza sativa), 3'ss of exon 2
----gtaagtgttgtcgatcgaagattttttctgattcactgccaagacttaa---cattgtttatatctcgctgctt-cctattggcttgg--gcagACATGTCCTATTTCCAAGGATTTTTCTTCTGCCCAGAAGTGGCGTCTTTGCTGCTACACAACTTCTGCGTCTACCACATCAATCCCCAGGGGCATGAGGT
    ||||          |||     || ||   |  ||  |   |      |   ||| | | |||| |   | |     | |||  |||   |||||||||||||  |||||||||||  | || ||||| || ||||||||  ||||||| ||||| |||||| | |||||||| ||||| |||||||| |||||
gtgagtaacaaccacatctcgtgagattcttggaagacatggtagaattgggaattcatcgatcatatatgattacccatttcttgatttgcatgcagACATGTCCTGCTTCCAAGGATTGCTGTTTTGCCCCGAGGTGGCGTCGCTGCTGCTCCACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAGGT

upper sequence: GRMZM2G100102_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g10740.1 (Oryza sativa), 3'ss of exon 2
----gtaagtgttgtcgatcgaagattttttctgattcactgccaagacttaa---cattgtttatatctcgctgctt-cctattggcttgg--gcagACATGTCCTATTTCCAAGGATTTTTCTTCTGCCCAGAAGTGGCGTCTTTGCTGCTACACAACTTCTGCGTCTACCACATCAATCCCCAGGGGCATGAGGT
    ||||          |||     || ||   |  ||  |   |      |   ||| | | |||| |   | |     | |||  |||   |||||||||||||  |||||||||||  | || ||||| || ||||||||  ||||||| ||||| |||||| | |||||||| ||||| |||||||| |||  
gtgagtaacaaccacatctcgtgagattcttggaagacatggtagaattgggaattcatcgatcatatatgattacccatttcttgatttgcatgcagACATGTCCTGCTTCCAAGGATTGCTGTTTTGCCCCGAGGTGGCGTCGCTGCTGCTCCACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAG--


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactgccaagacttaacattgtttatatctcgctgcttcctattggcttgggcagACATGTCCTATTTCCAAGGATTTTTCTTCTGCCCAGAAGTGGCGTCTTTGCTGCTACACAACTTCTGCGTCTACCACATCAATCCCCAGGGGCATGAGGT
          acttaac  putative branch site (score: 3)
            ttaacattgtttatat  TA-rich tract