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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccctttcatgttcctgttctgttttaaagcaagtatttgaactgcagtacttgattttctggctactagaaagtcctaataattgcatatttggaatagGTGTTTGATGAAGCAGACATGCTACTCTGTGGAAGTTTTGAGAACCAGGTCATTCGTCTCATCAATATGTTGAGATTTGATGAAAAGCTACTTTCTAGAG

Basic information

species Zea mays
transcript GRMZM2G100043_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100043_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os09g21520.1 (Oryza sativa), 3'ss of exon 3
---tccctttcatgttcctgttctgttttaaagcaagtatttgaactgcagtacttgattttctggctactagaaagtcctaataattgcatatttggaatagGTGTTTGATGAAGCAGACATGCTACTCTGTGGAAGTTTTGAGAACCAGGTCATTCGTCTCATCAATATGTTGAGATTTGATGAAAAGCTACTTTCTAGAG
   ||  || |   |     || |  | || || |  |||||  | ||||    ||||| |   ||||||   |   ||||||||   |   |||||  |||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| | ||| || ||||||||||||||||||| |||||  
acatcatttcctaatcttcattttcatgtatag-acatatttagattgcacagtttgatctctgggctacataaggttcctaatagcagttgatttg--atagGTATTTGATGAGGCAGACATGCTACTCTGTGGAAGTTTTGAAAATCAGGTCATTCGTCTCATCCACATGCTGCGATTTGATGAAAAGCTACTGTCTAGGA

upper sequence: GRMZM2G100043_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv01s0026g00640.t01 (Vitis vinifera), 3'ss of exon 3
tccctttcatgttcctgttctgttttaaagcaagtatttgaactgcagtacttgattttctggctactagaaagtcctaataattgcatatttggaatagGTGTTTGATGAAGCAGACATGCTACTCTGTGGAAGTTTTGAGAACCAGGTCATTCGTCTCATCAATATGTTGAGATTTGATGAAAAGCTACTTTCTAGAG
          ||   | || |  |   || ||   || |  | |   ||    |||||      |   |||    |||| |   |  |||        |||||||||| |||||||| ||||| || ||||| || ||| |||| || ||||| ||||||||  ||||| |  | |||||||||||| || | ||| |  
----------gtaaat-tttttctcagaatcatccatgtttattttggt----gatttgagaaatcacaga----cctagtttatttataacaatggcagGTGTTTGACGAAGCAGATATGCTTCTTTGTGGGAGCTTTCAGAATCAAGTCATCCGTCTCATAGATATGCTTCGTTTTGATGAAAAGATATTGTCTCGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtacttgattttctggctactagaaagtcctaataattgcatatttggaatagGTGTTTGATGAAGCAGACATGCTACTCTGTGGAAGTTTTGAGAACCAGGTCATTCGTCTCATCAATATGTTGAGATTTGATGAAAAGCTACTTTCTAGAG
                             tcctaat  putative branch site (score: 2)
                                taataattgcatattt  TA-rich tract