1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtgataactggtgaccattcctaatatttcgtttttgcattttggaaatcaacatccattaatgtctccctgtctgtttgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCAATGCTTTTAGATGTTC
species | Zea mays |
transcript | GRMZM2G099980_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|211452567|gb|FL415951.1|FL415951
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|211080223|gb|FL420001.1|FL420001
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|211466208|gb|FL385420.1|FL385420
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|211203962|gb|FL369985.1|FL369985
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|32910631|gb|CF015443.1|CF015443
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|211042377|gb|FL397272.1|FL397272
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|211330509|gb|FL416285.1|FL416285
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|211501608|gb|FL378289.1|FL378289
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|211020467|gb|FL418619.1|FL418619
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAEST: gi|211022189|gb|FL381966.1|FL381966
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTEST: gi|211159520|gb|FL378584.1|FL378584
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCT
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAEST: gi|211523925|gb|FL381024.1|FL381024
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACEST: gi|211204242|gb|FL383411.1|FL383411
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGAC
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|211194591|gb|FL404838.1|FL404838
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAAGACTTCTCTAACAAAAGTGGEST: gi|211269442|gb|FL420605.1|FL420605
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAA-GACTTCTCTAACAAAAGTGG
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTANCCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGEST: gi|78109085|gb|DV527502.1|DV527502
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAG
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|211147508|gb|FL408670.1|FL408670
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACEST: gi|211212936|gb|FL424466.1|FL424466
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAAC
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|33103991|gb|CF063951.1|CF063951
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|211471762|gb|FL410798.1|FL410798
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTEST: gi|211276957|gb|FL388228.1|FL388228
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGT
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|108953992|gb|EC364964.1|EC364964
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|211051698|gb|FL411698.1|FL411698
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACEST: gi|211355668|gb|FL392110.1|FL392110
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAAC
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAEST: gi|211186886|gb|FL377630.1|FL377630
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|211490263|gb|FL376582.1|FL376582
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
tttgcattttggaaatcaacatccattaatgtctccctgtctgtttgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCAATGCTTTTAGATGTTC
cattaat putative branch site (score: 246)
tctccctgtctgttt CT-rich tract
tttgtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgataactggtgaccattcctaatatttcgtttttgcattttggaaatcaacatccattaatgtctccctgtctgtttgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCAATGCTTTTAGATGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG