Skip to another splice site:
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 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgataactggtgaccattcctaatatttcgtttttgcattttggaaatcaacatccattaatgtctccctgtctgtttgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCAATGCTTTTAGATGTTC

Basic information

species Zea mays
transcript GRMZM2G099980_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099980_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os11g01170.1 (Oryza sativa), 3'ss of exon 3
gtaagtgataactggtgaccattcctaatatttcgtttttgcattttggaaatcaacatccattaatgtc--------tccctgtctgtt-----tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCAATGCTTTTAGATGTTC
    || | |  | |  |    || ||| || | |  |    || |   |||||||||||   |||||          |   || |||||     |||||||||||| ||||||||||||||||||||| | || || || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||
----gtaacagtttgccatatctcataa-atcttggatggatatgtccaaaatcaacatctgctaatgctgctattgattgttggctgttgcatttgtaaatcagCCAAAGGACTTCTGGAAGAATGAATTAAAGGATTTTTCTAACAAAAGCGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCCATGCTTCTAGATGTTC

upper sequence: GRMZM2G099980_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os12g01170.1 (Oryza sativa), 3'ss of exon 3
gtaagtgataactggtgaccattcctaatatttcgtttttgcattttggaaatcaacatccattaatgtc--------tccctgtctgtt-----tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCAATGCTTTTAGATGTTC
    || | |  | |  |    || ||| || | |  |    || |   |||||||||||   |||||          |   || |||||     |||||||||||| ||||||||||||||||||||| | || || || ||||||||||| |||||||||||||||||||||||||||||||| || |||||| |||||||||
----gtaacagtttgccatatctcataa-atcttggatggatatgtccaaaatcaacatctgctaatgctgctattgattgttggctgttgcatttgtaaatcagCCAAAGGACTTCTGGAAGAATGAATTAAAGGATTTTTCTAACAAAAGCGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211452567|gb|FL415951.1|FL415951
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211080223|gb|FL420001.1|FL420001
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|32910582|gb|CF015394.1|CF015394
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|31612036|gb|CD568658.1|CD568658
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAA-GTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211203962|gb|FL369985.1|FL369985
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|20507094|gb|BQ279481.1|BQ279481
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|32910631|gb|CF015443.1|CF015443
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211042377|gb|FL397272.1|FL397272
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|71428991|gb|DR810041.1|DR810041
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211330509|gb|FL416285.1|FL416285
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211501608|gb|FL378289.1|FL378289
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|33770989|gb|CF273283.1|CF273283
EST:     GGGCGCAACTAAGTCACACAATGAAAGCTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|60349938|gb|DN216911.1|DN216911
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|67033833|gb|CO462582.1|CO462582
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211020467|gb|FL418619.1|FL418619
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA
EST: gi|211022189|gb|FL381966.1|FL381966
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCT
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCT
EST: gi|211159520|gb|FL378584.1|FL378584
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA
EST: gi|211523925|gb|FL381024.1|FL381024
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGAC
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGAC
EST: gi|71428990|gb|DR810040.1|DR810040
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211204242|gb|FL383411.1|FL383411
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|76283944|gb|DV023512.1|DV023512
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211426560|gb|FL408424.1|FL408424
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211194591|gb|FL404838.1|FL404838
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAAGACTTCTCTAACAAAAGTGG
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAA-GACTTCTCTAACAAAAGTGG
EST: gi|26457465|gb|CA829048.1|CA829048
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|71427898|gb|DR808948.1|DR808948
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211269442|gb|FL420605.1|FL420605
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTANCCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAG
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAG
EST: gi|71449093|gb|DR830143.1|DR830143
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|78025444|gb|DV493831.1|DV493831
EST:     GCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|78544427|gb|DV621925.1|DV621925
EST:     AATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: AATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211147508|gb|FL408670.1|FL408670
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAAC
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAAC
EST: gi|32944273|gb|CF049092.1|CF049092
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|33103991|gb|CF063951.1|CF063951
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|60359114|gb|DN226087.1|DN226087
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211471762|gb|FL410798.1|FL410798
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGT
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGT
EST: gi|91048017|gb|EB158435.1|EB158435
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211276957|gb|FL388228.1|FL388228
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|108953992|gb|EC364964.1|EC364964
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211051698|gb|FL411698.1|FL411698
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAAC
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAAC
EST: gi|211054006|gb|FL385558.1|FL385558
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|61118250|gb|DN559211.1|DN559211
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|31612035|gb|CD568657.1|CD568657
EST:     TGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAAC-AAAGTGGA
genomic: TGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211355668|gb|FL392110.1|FL392110
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA
EST: gi|211186886|gb|FL377630.1|FL377630
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211490263|gb|FL376582.1|FL376582
EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcattttggaaatcaacatccattaatgtctccctgtctgtttgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCAATGCTTTTAGATGTTC
                       cattaat  putative branch site (score: 3)
                               tctccctgtctgttt  CT-rich tract
                                           tttgtaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgataactggtgaccattcctaatatttcgtttttgcattttggaaatcaacatccattaatgtctccctgtctgtttgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCAATGCTTTTAGATGTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG