1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttcaaattttgacgacttactatagtcagcagtgaaagaaaaacaggacagtgtttccttttccttccatgaacttgaaatgttgactctggtttgcagGAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTCCATGGACTCCTTTGACTTCTCATCATCACATTCTTCCCCAAACCAAGCC
species | Zea mays |
transcript | GRMZM2G099862_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAAGCTCAGCTGCTAATGTGACTGATCCATTCTCACTAGGGTCCAACAG GAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTCEST: gi|32855562|gb|CD995243.1|CD995243
genomic: AAAAGCTCAGCTGCTAATGTGACTGATCCATTCTCACTAGGGTCCAACAGgtgaagtcac ... tggtttgcagGAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTC
EST: AAAAGCTCAGCTGCTAATGTGACTGATCCATTCTCACTAGGGTCCAACAG GAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTCEST: gi|148970335|gb|EE021200.2|EE021200
genomic: AAAAGCTCAGCTGCTAATGTGACTGATCCATTCTCACTAGGGTCCAACAGgtgaagtcac ... tggtttgcagGAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTC
EST: AAAAGCTCAGCTGCTAATGTGACTGATCCATTCTCACTAGGGTCCAACAG GAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTCEST: gi|78077452|gb|DV505886.1|DV505886
genomic: AAAAGCTCAGCTGCTAATGTGACTGATCCATTCTCACTAGGGTCCAACAGgtgaagtcac ... tggtttgcagGAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTC
EST: AAAAGCTCAGCTGCTAATGTGACTGATCCATTCTCACTAGGGTCCAACAG GAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTCEST: gi|76017158|gb|DT944328.1|DT944328
genomic: AAAAGCTCAGCTGCTAATGTGACTGATCCATTCTCACTAGGGTCCAACAGgtgaagtcac ... tggtttgcagGAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTC
EST: AAAAGCTCAGCTGCTAATGTGACTGATCCATTCTCACTAGGGTCCAACAG GAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTCEST: gi|71320270|gb|DR796883.1|DR796883
genomic: AAAAGCTCAGCTGCTAATGTGACTGATCCATTCTCACTAGGGTCCAACAGgtgaagtcac ... tggtttgcagGAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTC
EST: AAAAGCTCAGCTGCTAATGTGACTGATCCATTCTCACTAGGGTCCAACAG GAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTCEST: gi|32798932|gb|CD951168.1|CD951168
genomic: AAAAGCTCAGCTGCTAATGTGACTGATCCATTCTCACTAGGGTCCAACAGgtgaagtcac ... tggtttgcagGAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTC
EST: AAAAGCTCAGCTGCTAATGTGACTGATCCATTCTCACTAGGGTCCAACAG GAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTC
genomic: AAAAGCTCAGCTGCTAATGTGACTGATCCATTCTCACTAGGGTCCAACAGgtgaagtcac ... tggtttgcagGAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTC
aggacagtgtttccttttccttccatgaacttgaaatgttgactctggtttgcagGAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTCCATGGACTCCTTTGACTTCTCATCATCACATTCTTCCCCAAACCAAGCC
tgttgac putative branch site (score: 23)
ttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcaaattttgacgacttactatagtcagcagtgaaagaaaaacaggacagtgtttccttttccttccatgaacttgaaatgttgactctggtttgcagGAATTTGCTGGATAAGCAGAATCTAGGTGACCAGTTCTCTGTATCCACTTCCATGGACTCCTTTGACTTCTCATCATCACATTCTTCCCCAAACCAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - tcagcag
- - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgttga