1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctttgcgatgacatcgattgcgttttacagcactttatacgtttctcaaactttactaatcctgcatgggctaaacaaccaatataatttcttttgcagAATGGTGATCCTCGCCTTTCATGCTTTGGCCTGATGAAAAACAGTAGGGATGGGAAAAGCTATAGCACAAATCTTGCATATACACCTCCAGAATATTTAA
species | Zea mays |
transcript | GRMZM2G099598_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCACGACCTAAATGCATATAGGGTCCTCTTTGATGAG AATGGTGATCCTCGCCTTTCATGCTTTGGCCTGATGAAAAACAGTAGGTTT
genomic: ACCACGACCTAAATGCATATAGGGTCCTCTTTGATGAGgtaactgttc ... tcttttgcagAATGGTGATCCTCGCCTTTCATGCTTTGGCCTGATGAAAAACAGTAGG-GA
ctcaaactttactaatcctgcatgggctaaacaaccaatataatttcttttgcagAATGGTGATCCTCGCCTTTCATGCTTTGGCCTGATGAAAAACAGTAGGGATGGGAAAAGCTATAGCACAAATCTTGCATATACACCTCCAGAATATTTAA
tttcttttgc CT-rich tract
aatataatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttgcgatgacatcgattgcgttttacagcactttatacgtttctcaaactttactaatcctgcatgggctaaacaaccaatataatttcttttgcagAATGGTGATCCTCGCCTTTCATGCTTTGGCCTGATGAAAAACAGTAGGGATGGGAAAAGCTATAGCACAAATCTTGCATATACACCTCCAGAATATTTAA
- - tgcgatg
- - - - - - - - - - - - - tacagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccaa