1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatataccgcatcagcagaaagtccttagctaaattcaacctgcttgtattttctaggtctaatgatcgtaaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAGTAGCCATTGAAGTGGAAGACCGGGCACAACGTTCAGCAATAACAA
species | Zea mays |
transcript | GRMZM2G099547_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|78117103|gb|DV535490.1|DV535490
genomic: GAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|60394679|gb|DN227549.1|DN227549
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|101392937|gb|EB818399.1|EB818399
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|78075508|gb|DV503942.1|DV503942
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|211360252|gb|FL253401.1|FL253401
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|60348216|gb|DN215189.1|DN215189
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|12045916|gb|BF728146.1|BF728146
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGTAATGTGGAGTTGTCCAEST: gi|32846204|gb|CD985885.1|CD985885
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGG-AAGGTGGACTTGTCCA
EST: ACGTTATTGACGGAGCGCTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|86471527|gb|DY237897.1|DY237897
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|60337543|gb|DN204516.1|DN204516
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|71433975|gb|DR815025.1|DR815025
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|148980593|gb|EE027217.2|EE027217
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|71433974|gb|DR815024.1|DR815024
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGTTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|149104413|gb|EE289858.2|EE289858
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|50325142|gb|CO520268.1|CO520268
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|60351167|gb|DN218140.1|DN218140
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGAGTTGTCCAAEST: gi|84351516|gb|DW245921.1|DW245921
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGATACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|16920282|gb|BM074585.1|BM074585
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|71757029|gb|DR954966.1|DR954966
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|16925502|gb|BM078570.1|BM078570
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAEST: gi|78180203|gb|DV550576.1|DV550576
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGAGTTGTCCAAEST: gi|6827273|gb|AW330916.1|AW330916
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGAGTTGTCCAAEST: gi|71450211|gb|DR831261.1|DR831261
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
EST: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACAT GATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
genomic: ACGTTATTGACGGAGCACTGAGTTCAGTTGCTGCTGAGACAAATCCACATgtatataccg ... aaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAA
ttagctaaattcaacctgcttgtattttctaggtctaatgatcgtaaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAGTAGCCATTGAAGTGGAAGACCGGGCACAACGTTCAGCAATAACAA
gtctaat putative branch site (score: 3)
taaattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatataccgcatcagcagaaagtccttagctaaattcaacctgcttgtattttctaggtctaatgatcgtaaaactgcagGATGCTCCTGTACCTCCTTGCATCACACAACTGGAAGGTGGACTTGTCCAAGTAGCCATTGAAGTGGAAGACCGGGCACAACGTTCAGCAATAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA