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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttggagtctcaattctgcttagaggcacatgtccttttctcgatttcagttcttggttgttgttttgtttcaacgtagtgttcttctgtcccagGCTGAGTTCTTGAGGAAAGCGCCAGGAGTTAAGCATGTTGAGAGAGACATGAAGGTACAGAAATTGACTACACACACCCCTCAGTTTCTCGGATTGCCAA

Basic information

species Zea mays
transcript GRMZM2G099452_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099452_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g48650.3 (Oryza sativa), 3'ss of exon 2
gtatttggagtctcaattctgcttag-aggcacatgtccttttctcgatttcagttcttggttgttgttttgtttcaacgtagtgttctt---ctgtcccagGCTGAGTTCTTGAGGAAAGCGCCAGGAGTTAAGCATGTTGAGAGAGACATGAAGGTACAGAAATTGACTACACACACCCCTCAGTTTCTCGGATTGCCAA
                   |  |||| |     || || |||  ||  |    |||   | || || | |||  | |||  ||   ||||   ||||   ||||||| ||| | |||||||| |||||||| |||||||| |||||||| |||||| ||||||||||||| |||||||| || || ||||| ||||||||||
------------------gtatttagcatttttatatcttttcttctttcctggtttaagattattatcttggctgaacacagcaatctttcactgtgttagGCTGAATTCCTAAGGAAAGCCCCAGGAGTAAAGCATGTGGAGAGAGATATGAAGATACAGAAATTGACGACACACACTCCACAATTTCTTGGATTGCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32800529|gb|CD952765.1|CD952765
EST:     GCTACCACCATCTTATCAATGGCTTTGCAGTTCACATGTCGTCGCTGCAG                         GCTGAGTTCTTGAGGAAAGCGCCAGGAGTTA
genomic: GCTACCACCATCTTATCAATGGCTTTGCAGTTCACATGTCGTCACTGCAGgtatttggag ... tctgtcccagGCTGAGTTCTTGAGGAAAGCGCCAGGAGTTA
EST: gi|5268626|gb|AI770590.1|AI770590
EST:     GCTACCACCATCTTATCAATGGCTTTGCAGTTCACATGTCGTCACTGCAG                         GCTGAGTTCTTGAGGAAAGCGCCAGGAGTTAAGCATGTTGAGAGAGACATG
genomic: GCTACCACCATCTTATCAATGGCTTTGCAGTTCACATGTCGTCACTGCAGgtatttggag ... tctgtcccagGCTGAGTTCTTGAGGAAAGCGCCAGGAGTTAAGCATGTTGAGAGAGACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgatttcagttcttggttgttgttttgtttcaacgtagtgttcttctgtcccagGCTGAGTTCTTGAGGAAAGCGCCAGGAGTTAAGCATGTTGAGAGAGACATGAAGGTACAGAAATTGACTACACACACCCCTCAGTTTCTCGGATTGCCAA
                                       tgttcttctgtccc  CT-rich tract
                       ttttgttt  TA-rich tract