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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttgctgtaatctcctcaatgtttggtcgtctctcaagagcagggactacgttttccacgtgcttcaatttaattacccaactaacttcaatctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC

Basic information

species Zea mays
transcript GRMZM2G099352_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099352_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g38000.2 (Oryza sativa), 3'ss of exon 3
gtttgtttgctgtaatctcctcaatgtttggtcgtctctcaagagcagggactacgttttccacgtgcttcaatttaattacccaactaacttcaatctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC
||||||||| |  ||    ||||| |  | || || | | || |       |  | |  ||    ||  ||||   | ||           |||| | | |   |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||| ||||| || || ||||||||  | |
gtttgtttggttcaa----ctcaa-gcatcgtagtatttaaaaa-------cctcatgatctttttggctcaacgcacttg----------ttcattatcttttgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTCGACTGGGACCCCAAGGGCAAGGTTGGCCCGACCACCCCTCTGCCGGATCTTGTAACCATCCATGCTC

upper sequence: GRMZM2G099352_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
-------------------------gtttgtttgctgtaatctcctcaatgtttggtcgtctctc-------aa---gagcagggactacgttttccacgtgctt-caattta--attacccaactaacttcaat------ctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC
                          | ||||  |||   | | ||   | ||   |  |   ||       ||   |||      |  | |||      ||||| || |||    ||    |||| | |  ||       |||||    |||| ||| | || |||||||| ||||||||||| |||||||| || |||||||||   || || || ||||| ||||| ||  |||| |||||||| |  |
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC

upper sequence: GRMZM2G099352_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
-----------------------gtttgtttgctgtaatctcctcaatgttt--------ggtcgtctctcaagagcagggactacgttttccacgtgcttcaatttaattacccaactaacttcaatctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC
                       || |  |  ||||  ||||||   || ||        |||| |   |    || |   |   ||||| | |  ||  |  | |  ||     || |   |||  | | |    ||||||||  | || ||||| || ||||||||||| ||||||||||| |||||||||   || || || || |||||||| ||  |||| |||||||| |  |
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatg-tttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC

upper sequence: GRMZM2G099352_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S31_178V6.1 (Physcomitrella patens), 3'ss of exon 5
------------gtttgtttgctgtaatctcctcaatgtttggtcg---tctctcaagagcagggactacgttttccacgtgcttcaatttaattacc-caactaacttcaatctgtcg-----------cgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC
            | || ||     |  |   |||||   ||    |   |   ||||     | || | | ||    | |  | |  |||   ||    | || ||  |||   | | |            |||||| ||  | ||||||||||| || ||||||||||||||||||||||||||||||   || || || ||||| ||||| ||  |||| |||||||| |  |
gtattcttgacagctttttaatcttgttagtctcaaccgttcactgagtttcttcaattattgtgatttcattcggaaggctcgtttattagttttttactacgaatctcaggttttggatgtatgtttttgcagGGAGTGTTGGGCATCAAGGTTAAAATCATGCTTGACTGGGACCCGAAGGGCAAGCAAGGACCTATGACTCCCCTTCCAGATGTGGTTACCATCCATATGC

upper sequence: GRMZM2G099352_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S487_22V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------------------------gtttgtt--tgctgtaatctcctcaatgtttggtcgtctctcaagagcaggg-actacgttttccacgtgcttcaatttaa--ttacccaactaacttcaatctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC
                                 |||| ||  ||||  |  |   | |   ||        | ||| |         |||| |  |   | | |   ||| | |   |   ||  |  ||||    |   | |||||| ||  | || |||||||||||||| ||||| ||||||||||| |||| ||||   ||  |  | ||||  ||||| ||  |||||||||| ||||  |
gcacgtgtggacattttttgtctaatggtggctgtttcttcatgctagagacctattacacttctacaacgtttcatgtttttaatgctacatcattttc-tacagaaatatgagacttgtcagttgtcttc--cttactgtgcagGGAGTATTGGGTATCAAGGTGAAGATTATGCTCGACTGGGACCCCAAGGTCAAGCAAGGATCTGTGACTCTACTTCCAGATGTGGTGACCATTCACATGC

upper sequence: GRMZM2G099352_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 5
gtttgt---ttgctgtaatctcctcaatgtttggtcgtctctcaagagcagggactacgttttccacgtgcttcaatttaatta-ccca----actaac----------ttcaat--ctgtcgc--gcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC
|| |||   |     || | |  |   | ||   |  ||||| | ||     || | |||  ||    |   || || ||  ||  |||    | | ||          || |||  ||||     |||||| ||  | ||||||||||| ||||||||||| ||||||||||| |||||||||   ||||| || || |||||||| ||  |||| || ||||| |  |
gtatgtggatcttcatagtgtttttggtcttcaattttctctgacgatgctagatttcgtcatcgtttttgctctatatacctaatccagtgtattgacgtgttacttttttaattactgttcttggcagGGAGTGTTGGGCATCAAGGTAAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGCCCCATGACCCCTCTTCCAGATGTGGTTACTATCCATATGC

upper sequence: GRMZM2G099352_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
-------gtttgtttgctgtaatctcctcaatgtttggtcgtctctcaagagcagggacta-----cgttttccacgtgcttcaatttaattacccaactaacttcaatctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC
          || ||| |||       |   |  ||  ||||     ||    |  || |      || | | | ||   |  |  | || |     | || |||   | |||    ||||| || || ||||| ||||||||||||||||| |||||||| || ||||| |||   || || || ||||| ||||| ||  | ||||| || ||||  |
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggatta-ctttggtatgtt-tacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC

upper sequence: GRMZM2G099352_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ31038 (Selaginella moellendorffii), 3'ss of exon 5
gtttgtttgctgtaatctcctcaatgtttggtcgtctctcaagagcagggactacgttttccacgtgcttcaatttaattacccaactaacttcaatctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC
                                          | ||| | |||   |  |     |  ||  ||  | || |  | |  | |  | | ||  | |||||| ||| | || |||||||||||||||||||| |||||||| || |||||||||   || |||   || || || |||||| ||||||| |||||    |
------------------------------------------gtgcaagaactcgatcgttttgat--ttggatccagtttctaagc--attggattgtgctg-gcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: GRMZM2G099352_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
gtttgtttgctgtaatctcctcaatgtttggtcgtctctcaagagcagggactacgttttccacgtgcttcaatttaattacccaac-taacttcaatctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC
                                          |  || | |||   |  |     |  ||  ||  | || |  | | |    |    ||| |  |||||| ||| | || |||||||||||||||||||| |||||||| || |||||||||   || |||   || || || |||||| ||||||| |||||    |
------------------------------------------gtacaagaactcgatcattttgat--ttggatccagtttctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: GRMZM2G099352_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ34676 (Selaginella moellendorffii), 3'ss of exon 5
gtttgtttgctgtaatctcctcaatgtttggtcgtctctcaagagcagggactacgttttccacgtgcttcaatttaattacccaactaacttcaatctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC
                                          | ||| | |||   |  |     || ||    |  | |  | ||  |  ||  ||   ||  |||||| ||| | || |||||||||||||||||||| |||||||| || |||||||||   || |||   || || || |||||| ||||||| |||||    |
------------------------------------------gtgcaagaactcgatcgttt---tgatttggatccagtttctaagca--ttggattgttctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18383691|gb|BM416891.1|BM416891
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|211098205|gb|FL312088.1|FL312088
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|89250739|gb|DY622525.1|DY622525
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|15353016|gb|BI502627.1|BI502627
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|211305446|gb|FL415290.1|FL415290
EST:     AGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: AGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|28911348|gb|BM074837.2|BM074837
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACGCGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|32939100|gb|CF043919.1|CF043919
EST:     ACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: ACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|22520626|gb|BU079437.1|BU079437
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGGGGTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|32850182|gb|CD989863.1|CD989863
EST:     ACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: ACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|76019501|gb|DT946671.1|DT946671
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|88755067|gb|DY539208.1|DY539208
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTTTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|7031285|gb|AW461023.1|AW461023
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACNCGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|33096662|gb|CF056656.1|CF056656
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|93282755|gb|EB675019.1|EB675019
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|6540618|gb|AW225280.1|AW225280
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTCGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|4647504|gb|AI622579.1|AI622579
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTTTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|28911403|gb|BM075425.2|BM075425
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|5670902|gb|AI932165.1|AI932165
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTTTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|37385348|gb|CF629811.1|CF629811
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTCGGTATCAAGGTGAAGATCATGCTTGACT-GGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|32846529|gb|CD986210.1|CD986210
EST:     ACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: ACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|45568440|gb|CK986064.1|CK986064
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTCGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|50326252|gb|CO521378.1|CO521378
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|30306735|gb|CD001408.1|CD001408
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|213186778|gb|FM188940.1|FM188940
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|211248983|gb|FL468401.1|FL468401
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTCGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|5124500|gb|AI746236.1|AI746236
EST:     AGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGG
genomic: AGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGAC-AGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGG
EST: gi|28911352|gb|BM348864.2|BM348864
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|78116934|gb|DV535321.1|DV535321
EST:     CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAACGAGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|9731105|gb|BE509857.1|BE509857
EST:     AGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAG                         GGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGTCTGGGACCCGAAGGGC
genomic: AGTACATTGACTCGGCTGTGAGACACGTTCTTCTCAGACAGgtttgtttgc ... tgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgttttccacgtgcttcaatttaattacccaactaacttcaatctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC
                               aactaac  putative branch site (score: 1)
               ttcaatttaatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgtttgctgtaatctcctcaatgtttggtcgtctctcaagagcagggactacgttttccacgtgcttcaatttaattacccaactaacttcaatctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC