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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttatttttacctccctaagtttaattcagtagctatttacattctgtgttatagcatacttgttattttgtgggaaacatattttttatatgcatggtttcgtacattttgttctgttccaaattaccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGCAGGGATGTCGATGGAAGTCGCATTGTTGTTGAGTTTGCTAAAGGG

Basic information

species Zea mays
transcript GRMZM2G099317_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099317_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g17710.1 (Oryza sativa), 3'ss of exon 3
gtacgttatttttacctccctaagtttaattcagtagctatttacattctgtgttatagcatacttgttat-tttgtgggaaacatattttttatatgcatggtttcgtacattttgttctgttccaaattaccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGCAGGGATGTCGATGGAAGTCGCATTGTTGTTGAGTTTGCTAAAGGG----
                    || ||  ||| |       ||||   |  || || |   |   ||| |||  ||  |  ||    |||||| |  |   |||  | | || ||||||     | | |  |||||| |||||| |||||||| |  |||||||| |||||||| |||||  | ||||||||||||||||| |||||||| |||||| |||||||||||||||||||     
-------------------gtatgtg-aatacttccctcatttttttattgcgtaacttctctctttttaagttcttatgaggtgtattttgttcacatatgagtcc-tatattttgcgacat-ctattttaccaaacagGAATTCAGTGATCCCCGTGATGCTGATGAAGCGCGGTATAACCTAGATGGCAGGGATGTTGATGGAAGCCGCATTCTTGTTGAGTTTGCTAAAGGAGTAA

upper sequence: GRMZM2G099317_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g17710.2 (Oryza sativa), 3'ss of exon 3
gtacgttatttttacctccctaagtttaattcagtagctatttacattctgtgttatagcatacttgttat-tttgtgggaaacatattttttatatgcatggtttcgtacattttgttctgttccaaattaccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGCAGGGATGTCGATGGAAGTCGCATTGTTGTTGAGTTTGCTAAAGGG
                    || ||  ||| |       ||||   |  || || |   |   ||| |||  ||  |  ||    |||||| |  |   |||  | | || ||||||     | | |  |||||| |||||| |||||||| |  |||||||| |||||||| |||||  | ||||||||||||||||| |||||||| |||||| ||||||||||||||||||| 
-------------------gtatgtg-aatacttccctcatttttttattgcgtaacttctctctttttaagttcttatgaggtgtattttgttcacatatgagtcc-tatattttgcgacat-ctattttaccaaacagGAATTCAGTGATCCCCGTGATGCTGATGAAGCGCGGTATAACCTAGATGGCAGGGATGTTGATGGAAGCCGCATTCTTGTTGAGTTTGCTAAAGGA

upper sequence: GRMZM2G099317_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g02880.1 (Oryza sativa), 3'ss of exon 3
gtacgttatttttacctccctaagtttaattcagtagctatttacattctgtgttatagcatacttgttattttgtgggaaacatattttttatatgcatggtttcgtacattttgttctgttccaaattaccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGCAGGGATGTCGATGGAAGTCGCATTGTTGTTGAGTTTGCTAAAGGG
                                      ||| |  ||| |   |       |  ||  | | || |   ||   ||  |||||  | ||    | |  |||||||       ||    |||||| ||||||||||||||| |  |||||||| || |||||  ||||| | || |||||||||||||| |||||||| |||||| ||||||||||||||||||||
-------------------------------------gtatgtgaattattcttccctcatttttttctctcttttctaaattgtacctttta-gttcacaagtcca-acatttttcggatgtctcttttaccaaacagGAGTTCAGTGATCCCCGTGATGCTGAGGAAGCAAGGTACAACCTTGATGGCAGGGATGTTGATGGAAGCCGCATTCTTGTTGAGTTTGCTAAAGGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211251033|gb|FL007482.1|FL007482
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|87155664|gb|DY400453.1|DY400453
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|86472004|gb|DY238374.1|DY238374
EST:     AATACGAAAAGTGGAGTTGAAGCGCGACTATGCTTTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|211251028|gb|FL007477.1|FL007477
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|71310802|gb|DR791706.1|DR791706
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|50336824|gb|CO531950.1|CO531950
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|211251036|gb|FL007485.1|FL007485
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|211251030|gb|FL007479.1|FL007479
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|76280523|gb|DV020091.1|DV020091
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|148941832|gb|EC886805.2|EC886805
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|71438958|gb|DR820008.1|DR820008
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|22491590|gb|BU051513.1|BU051513
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|71298912|gb|DR785451.1|DR785451
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|211251034|gb|FL007483.1|FL007483
EST:     AATACGAGAAGTGGANTTGAANCSCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|148934490|gb|EC878531.2|EC878531
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|71771421|gb|DR969358.1|DR969358
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|211251026|gb|FL007475.1|FL007475
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGAT
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGAT
EST: gi|19436214|gb|BM952624.1|BM952624
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|211248808|gb|FL007473.1|FL007473
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCATGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|31406034|gb|CD484766.1|CD484766
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|211251029|gb|FL007478.1|FL007478
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|211251027|gb|FL007476.1|FL007476
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|26558569|gb|CA830804.1|CA830804
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|211248809|gb|FL007474.1|FL007474
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|71438768|gb|DR819818.1|DR819818
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|29945034|gb|CB815435.1|CB815435
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|76282712|gb|DV022280.1|DV022280
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|74232122|gb|DT640036.1|DT640036
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|37425051|gb|CF650261.1|CF650261
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|211248807|gb|FL007472.1|FL007472
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|19351122|gb|BM895654.1|BM895654
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|87153453|gb|DY398242.1|DY398242
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|149070621|gb|EE159032.2|EE159032
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|89251320|gb|DY623106.1|DY623106
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|76014888|gb|DT942058.1|DT942058
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|50333687|gb|CO528813.1|CO528813
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|76289551|gb|DV029119.1|DV029119
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|149108516|gb|EE292817.2|EE292817
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|211251031|gb|FL007480.1|FL007480
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|23357517|gb|BU645166.1|BU645166
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|148934137|gb|EC878155.2|EC878155
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|211251037|gb|FL007486.1|FL007486
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
EST: gi|148959184|gb|EE010639.2|EE010639
EST:     AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT                         GAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC
genomic: AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATTgtacgttatt ... taccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttttatatgcatggtttcgtacattttgttctgttccaaattaccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGCAGGGATGTCGATGGAAGTCGCATTGTTGTTGAGTTTGCTAAAGGG
     tttatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgttatttttacctccctaagtttaattcagtagctatttacattctgtgttatagcatacttgttattttgtgggaaacatattttttatatgcatggtttcgtacattttgttctgttccaaattaccatacagGAGTTCAGTGAACATCGTGATGCCGATGAAGCTCGGTACCAACTAGATGGCAGGGATGTCGATGGAAGTCGCATTGTTGTTGAGTTTGCTAAAGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG