1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtcgttataatgtttacacacatgaactgtcttcaggtactgttgctacctgaagtcttgaaggaaatcatgtcttaactgtttgatgccacttctgcagGCATAGCAGCTTGTTTTTTCAGCCTGGTGAGGTCCGGCCGGTTGATCCATCGAGCATACCTGAATACAAGCAACCTCCTTCTACTGTTTTTAAGTGTGCA
species | Zea mays |
transcript | GRMZM2G098973_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACAACTTGTCAATTCTTCAAGCTGGATTGATCGGGCTTGACCTTCGGAG GCATAGCAGCTTGTTTTTTCAGCCTGGTGAGGTCCGGCCGGGTGATCCATCEST: gi|78026449|gb|DV494836.1|DV494836
genomic: GACAACTTGTCAATTCTTCAAGCTGGATTGATCGGGCTTGACCTTCGGAGgtactaaaac ... acttctgcagGCATAGCAGCTTGTTTTTTCAGCCTGGTGAGGTCCGGCCGGTTGATCCATC
EST: GACAACTTGTCAATTCTTCAAGCTGGATTGATCGGGCTTGACCTTCGGAG GCATAGCAGCTTGTTTTTTCAGCCTGGTGAGGTCCGGCCGGTTGATCCATCEST: gi|149059464|gb|EE156949.2|EE156949
genomic: GACAACTTGTCAATTCTTCAAGCTGGATTGATCGGGCTTGACCTTCGGAGgtactaaaac ... acttctgcagGCATAGCAGCTTGTTTTTTCAGCCTGGTGAGGTCCGGCCGGTTGATCCATC
EST: ACAACTTGTCAATTCTTCAAGCTGGATTGATCGGGGCT-GACCTTCGGAG GCATAGCAGCTTGTTTTTTCAGCCTGEST: gi|4776102|gb|AI665105.1|AI665105
genomic: ACAACTTGTCAATTCTTCAAGCTGGATTGATCGGG-CTTGACCTTCGGAGgtactaaaac ... acttctgcagGCATAGCAGCTTGTTTTTTCAGCCTG
EST: GACAACTTGTCAATTCTTCAAGCTGGATTGATCGGGCTTGACCTTCGGAG GCATAGCAGCTTGTTTTTTCAGCCTGGTGAGGTCCGGCCGGTTGATCCATC
genomic: GACAACTTGTCAATTCTTCAAGCTGGATTGATCGGGCTTGACCTTCGGAGgtactaaaac ... acttctgcagGCATAGCAGCTTGTTTTTTCAGCCTGGTGAGGTCCGGCCGGTTGATCCATC
ctacctgaagtcttgaaggaaatcatgtcttaactgtttgatgccacttctgcagGCATAGCAGCTTGTTTTTTCAGCCTGGTGAGGTCCGGCCGGTTGATCCATCGAGCATACCTGAATACAAGCAACCTCCTTCTACTGTTTTTAAGTGTGCA
ccacttct CT-rich tract
aaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgttataatgtttacacacatgaactgtcttcaggtactgttgctacctgaagtcttgaaggaaatcatgtcttaactgtttgatgccacttctgcagGCATAGCAGCTTGTTTTTTCAGCCTGGTGAGGTCCGGCCGGTTGATCCATCGAGCATACCTGAATACAAGCAACCTCCTTCTACTGTTTTTAAGTGTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - catgaac
- - - - - - - - - - - - - - - - - - - -ctgttgc
- - - - - - - - - - - - - - - - - - - - - - - -acctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgcc