1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aatcaatagcttggacattgttttttcatttattgattctgaggaaggaatctgcaaaatgtgtatttagctaatttctgtagtgatttttgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAG
species | Zea mays |
transcript | GRMZM2G098815_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|78117671|gb|DV536058.1|DV536058
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|148952745|gb|EC898726.2|EC898726
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|71438316|gb|DR819366.1|DR819366
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|74245464|gb|DT653378.1|DT653378
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|71433709|gb|DR814759.1|DR814759
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|76926415|gb|DV170849.1|DV170849
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|149082609|gb|EE171808.2|EE171808
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|50336738|gb|CO531864.1|CO531864
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|89253146|gb|DY624932.1|DY624932
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|211052434|gb|FL214545.1|FL214545
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|71765717|gb|DR963654.1|DR963654
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|91873215|gb|EB403172.1|EB403172
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|149076111|gb|EE164690.2|EE164690
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|14245049|gb|BG873631.1|BG873631
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|78120056|gb|DV538440.1|DV538440
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTEST: gi|148960798|gb|EE011460.2|EE011460
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
aggaatctgcaaaatgtgtatttagctaatttctgtagtgatttttgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAG
agctaat putative branch site (score: 57)
tttttgtttctc putative PPT
aaaatgtgtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcaatagcttggacattgttttttcatttattgattctgaggaaggaatctgcaaaatgtgtatttagctaatttctgtagtgatttttgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAG
- - - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - gattctg
- - - - - - - - - - - - - - - - - - - - - - - - -atctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtattt