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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatcaatagcttggacattgttttttcatttattgattctgaggaaggaatctgcaaaatgtgtatttagctaatttctgtagtgatttttgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAG

Basic information

species Zea mays
transcript GRMZM2G098815_T03
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438169|gb|DR819219.1|DR819219
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|71765717|gb|DR963654.1|DR963654
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|78117671|gb|DV536058.1|DV536058
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|148952745|gb|EC898726.2|EC898726
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|71438316|gb|DR819366.1|DR819366
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|74245464|gb|DT653378.1|DT653378
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|71433709|gb|DR814759.1|DR814759
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|76926415|gb|DV170849.1|DV170849
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|149082609|gb|EE171808.2|EE171808
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|50336738|gb|CO531864.1|CO531864
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|89253146|gb|DY624932.1|DY624932
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|211052434|gb|FL214545.1|FL214545
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|91873215|gb|EB403172.1|EB403172
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|149076111|gb|EE164690.2|EE164690
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|14245049|gb|BG873631.1|BG873631
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|78120056|gb|DV538440.1|DV538440
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
EST: gi|148960798|gb|EE011460.2|EE011460
EST:     CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG                         GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT
genomic: CGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAGgtcttttctc ... tgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggaatctgcaaaatgtgtatttagctaatttctgtagtgatttttgtttctcagGTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAG
                       agctaat  putative branch site (score: 3)
                                         tttttgtttctc  putative PPT
          aaaatgtgtattta  TA-rich tract