1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atctttatctgagcattgattggttcatgggctcatggctattcagtcactttgtgccctttgagactgttagtatacttcctataacctcctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAGCATTTTTTCTGCCAGACCTGTACAGCTGAAAATGGTAAGATGGTTGAG
species | Zea mays |
transcript | GRMZM2G097726_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|78180631|gb|DV550959.1|DV550959
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: TCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|211072810|gb|FL228287.1|FL228287
genomic: TCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGGATGACA-TCAAAGAAGCAAAGAAACTCGEST: gi|148942300|gb|EC887317.2|EC887317
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGG-ATGACAATCAAAGAAGCAAAGAAACTCG
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|148941206|gb|EC886093.2|EC886093
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|93282376|gb|EB674640.1|EB674640
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|8551650|gb|BE128821.1|BE128821
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATGCAATCCAGATG-CCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|91872374|gb|EB402331.1|EB402331
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|32825292|gb|CD965014.1|CD965014
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|78082597|gb|DV511009.1|DV511009
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|211072814|gb|FL228291.1|FL228291
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCNAAGAAGCAAAGAAACTCGAEST: gi|78074295|gb|DV502729.1|DV502729
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|76927199|gb|DV171172.1|DV171172
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|67022285|gb|CO451034.1|CO451034
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|50336946|gb|CO532072.1|CO532072
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|9743182|gb|BE519330.1|BE519330
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|91872230|gb|EB402187.1|EB402187
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|22818819|gb|BU498909.1|BU498909
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAAGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|148951992|gb|EC897774.2|EC897774
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|148957892|gb|EC904047.2|EC904047
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: ATACAATCCAGATGACCCTTATGATCCAATGCGAGGAATGTTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGEST: gi|32823010|gb|CD962719.1|CD962719
genomic: ATACAATCCAGATGACC-TTATGATCCAATGCGAGGAATGTT-CTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCG
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGGGGAATGGTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|60354816|gb|DN221789.1|DN221789
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAEST: gi|60357704|gb|DN224677.1|DN224677
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
EST: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTG GTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
genomic: CCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGgtgagcatta ... cctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGA
gtcactttgtgccctttgagactgttagtatacttcctataacctcctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAGCATTTTTTCTGCCAGACCTGTACAGCTGAAAATGGTAAGATGGTTGAG
ctataac putative branch site (score: 129)
cttcctataacctcct CT-rich tract
ttagtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctttatctgagcattgattggttcatgggctcatggctattcagtcactttgtgccctttgagactgttagtatacttcctataacctcctctttcagGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAGCATTTTTTCTGCCAGACCTGTACAGCTGAAAATGGTAAGATGGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - -ttgattg
- - - - - - - - - - - gttcatg
- - - - - - - - - - - - - - - gctcatg