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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtttttcttctcagtacttgaatttgagaatgtgtttactttaggttactaactttcatttttgtctggattccattagACTGGCATCTGAACGAACCCCACAAAGTTATCTGAAAGAAAAGGCAGAATCAGTGATGCAGAAACTGGTCACCTGCGTTCAAAATACAGTT

Basic information

species Zea mays
transcript GRMZM2G097502_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78090767|gb|DV519141.1|DV519141
EST:     CAATGGCATAACTTGGACCGCTACTTTGAAAA                         ACTGGCATCTGAACGAACCCCACAAAGTTATCTGAAAGAAAAGGCAGAATC
genomic: CAATGGCATAACTTGGACCGCTACTTTGAAAAgtacagtttt ... attccattagACTGGCATCTGAACGAACCCCACAAAGTTATCTGAAAGAAAAGGCAGAATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagaatgtgtttactttaggttactaactttcatttttgtctggattccattagACTGGCATCTGAACGAACCCCACAAAGTTATCTGAAAGAAAAGGCAGAATCAGTGATGCAGAAACTGGTCACCTGCGTTCAAAATACAGTT
                      tactaac  putative branch site (score: 0)
                                              ttccatt  putative PPT
                         taactttcattttt  TA-rich tract