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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgctgtcgatcgaagattttttttttctgattcactgctaagacttaacattgtttatatgtcgctgcttcttattggcttgggcagACATGTCCTGTTTCCAAGGATTTTTCTTCTACCCGGAAGTGGCGACTTTGTTGCTACACAACTTCTGCGTCTACCACATCAATCCCCAGGGGCATGAGAT

Basic information

species Zea mays
transcript GRMZM2G096996_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096996_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g10740.2 (Oryza sativa), 3'ss of exon 2
----gtaagtgctgtcgatcg-aagattttttttttctgattcactgctaagacttaacattgtttatatgtcgctgctt-cttattggcttgg--gcagACATGTCCTGTTTCCAAGGATTTTTCTTCTACCCGGAAGTGGCGACTTTGTTGCTACACAACTTCTGCGTCTACCACATCAATCCCCAGGGGCATGAGAT
    ||||   |      |||  ||||| ||            |    |  || ||  ||| | | |||| |   | |    || |||  |||   |||||||||||||| |||||||||||  | || | ||| || |||||| |  || |||| ||||| |||||| | |||||||| ||||| |||||||| ||| |
gtgagtaacaaccacatctcgtgagattcttggaagacatggtagaattgggaatt--catcgatcatatatgattacccatttcttgatttgcatgcagACATGTCCTGCTTCCAAGGATTGCTGTTTTGCCCCGAGGTGGCGTCGCTGCTGCTCCACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAGGT

upper sequence: GRMZM2G096996_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g10740.1 (Oryza sativa), 3'ss of exon 2
----gtaagtgctgtcgatcg-aagattttttttttctgattcactgctaagacttaacattgtttatatgtcgctgctt-cttattggcttgg--gcagACATGTCCTGTTTCCAAGGATTTTTCTTCTACCCGGAAGTGGCGACTTTGTTGCTACACAACTTCTGCGTCTACCACATCAATCCCCAGGGGCATGAGAT
    ||||   |      |||  ||||| ||            |    |  || ||  ||| | | |||| |   | |    || |||  |||   |||||||||||||| |||||||||||  | || | ||| || |||||| |  || |||| ||||| |||||| | |||||||| ||||| |||||||| |||  
gtgagtaacaaccacatctcgtgagattcttggaagacatggtagaattgggaatt--catcgatcatatatgattacccatttcttgatttgcatgcagACATGTCCTGCTTCCAAGGATTGCTGTTTTGCCCCGAGGTGGCGTCGCTGCTGCTCCACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAG--


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactgctaagacttaacattgtttatatgtcgctgcttcttattggcttgggcagACATGTCCTGTTTCCAAGGATTTTTCTTCTACCCGGAAGTGGCGACTTTGTTGCTACACAACTTCTGCGTCTACCACATCAATCCCCAGGGGCATGAGAT
          acttaac  putative branch site (score: 3)
            ttaacattgtttatat  TA-rich tract