Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttaagtcctaagcatgatatgttcatgaaattctatcaatgcatttttatcagtttttgtttataattatggccttaagaagtcctctatttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCTTTCAAACTCCCTCGCAAAGGTGGAAAAGGAAAACAGATCTTTGGGAG

Basic information

species Zea mays
transcript GRMZM2G096962_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096962_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g57670.1 (Oryza sativa), 3'ss of exon 3
----atttaagtcctaagcatgatatgttc-atgaaattctatcaatgcatttttatcagtttttgtttataattatggccttaagaagtcctctatttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCTTTCAAACTCCCTCGCAAAGGTGGAAAAGGAAAACAGATCTTTGGGAG
      ||   |||||   ||   || ||| || | | | ||  ||    |||    |||| || |   |||||  |  |||   ||     | |  ||   |||||||||||||| || || |||||||| || ||||||||||| ||||| || |||||| | || || |||||||| |||||||||||||| ||||||||
gcatgatttgttcctaccaatatcattttccataagagtataagaac---tttcatccagtgttagc--ataatcttaccctgttgagcatttgtgcttgagtagGTAAAAGAAGAGGCACAGCAACTTGCCCGTGTTTTTGAAACTATTGGGGCATTCAAAGTGCCACGTAAAGGTGGGAAAGGAAAACAGATATTTGGGAG

upper sequence: GRMZM2G096962_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA11G19820.1 (Glycine max), 3'ss of exon 3
atttaagtcctaagcatgatatgttcatgaaattctatcaatgcatttttatcagt---ttttgtttataattatggcct--taagaagtcctctatttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCTTTCAAACTCCCTCGCAAAGGTGGAAAAGGAAAACAGATCTTTGGGAG
   || |||   |   | |||   || |   | ||||| || | ||||||     |    | | ||| || | ||  | |  |||  ||   |  ||||   |||||||||||||| || || |||||||||| | ||||||||||  |||| ||||||||  |    || |||||||| ||||||||||| || ||||| ||
---tacgtct--actttcatactatcttctgaatctattaaagtatttttccttctacactatttttgtagtcatatcatggtaactaggtttacatttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG

upper sequence: GRMZM2G096962_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA12G08670.1 (Glycine max), 3'ss of exon 3
atttaagtcctaagcatgatatgttcatgaaattctatcaatgcatttttatcagtttttg---tttataattatggcct--taagaagtcctctatttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCTTTCAAACTCCCTCGCAAAGGTGGAAAAGGAAAACAGATCTTTGGGAG
   || |||   |   | |||   || |   | ||||| || | ||||||     |        ||| || | ||  | |  |||  ||   |  ||||   |||||||||||||| || ||||||||||||| | ||||||||||  |||| ||||||||  |    || |||||||| ||||||||||| || ||||| ||
---taggtct--actttcatactatcttctgaatctattaaagtatttttccttctacacaatttttgtagtcatatcatggtaactaggtttacatttctgtagGTAAAAGAAGAGGCACAACAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13178137|gb|BG349395.1|BG349395
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|13490830|gb|BG517594.1|BG517594
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211087730|gb|FL054352.1|FL054352
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|14645994|gb|BI180183.1|BI180183
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|13316131|gb|BG410578.1|BG410578
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211090167|gb|FL054356.1|FL054356
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAWAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAAC
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAAC
EST: gi|211087722|gb|FL054344.1|FL054344
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211518614|gb|FL054337.1|FL054337
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|32830089|gb|CD969767.1|CD969767
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG                         GTAAAAGAAGACGCCCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|32860092|gb|CD999773.1|CD999773
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG                         GTAAAAGAAGACGCCCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211087731|gb|FL054353.1|FL054353
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|33099864|gb|CF059824.1|CF059824
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG                         GTAAAAGAAGACGCCCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|32829981|gb|CD969659.1|CD969659
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG                         GTAAAAGAAGACGCCCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|32829709|gb|CD969387.1|CD969387
EST:     GGAAATGCAGCTGGAGCAGGAGAGACTAGAAGCTGAGAAAAAGCGG                         GTATCAGCAGACGCCCAATAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211322849|gb|FL127470.1|FL127470
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|148974517|gb|EE025302.2|EE025302
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211087725|gb|FL054347.1|FL054347
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|149089632|gb|EE178886.2|EE178886
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211087721|gb|FL054343.1|FL054343
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|31355725|gb|CD440082.1|CD440082
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211090166|gb|FL054355.1|FL054355
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211087718|gb|FL054340.1|FL054340
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211090165|gb|FL054354.1|FL054354
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|16379884|gb|BI993198.1|BI993198
EST:     TCAAGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: TCAAGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|15208882|gb|BI430766.1|BI430766
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|149010029|gb|EE041834.2|EE041834
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|16926981|gb|BM080049.1|BM080049
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|83279377|gb|DV943385.1|DV943385
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|32858543|gb|CD998224.1|CD998224
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG                         GTAAAAGAAGACGCCCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|148985808|gb|EE029766.2|EE029766
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211087728|gb|FL054350.1|FL054350
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAAAAGAAGACGCGCAACAACTTGCTCGAG
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAA-GAAGACGCGCAACAACTTGCTCGAG
EST: gi|13178451|gb|BG349709.1|BG349709
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211087719|gb|FL054341.1|FL054341
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|32848919|gb|CD988600.1|CD988600
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG                         GTAAAAGAAGACGCCCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|13516046|gb|BG518322.1|BG518322
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211518613|gb|FL054336.1|FL054336
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|32829797|gb|CD969475.1|CD969475
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG                         GTAAAAGAAGACGCCCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|15053619|gb|BI359164.1|BI359164
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211087726|gb|FL054348.1|FL054348
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGA
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGA
EST: gi|148967374|gb|EE018593.2|EE018593
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|32829763|gb|CD969441.1|CD969441
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG                         GTAAAAGAAGACGCCCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211087727|gb|FL054349.1|FL054349
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|5761970|gb|AI967018.1|AI967018
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211322850|gb|FL127471.1|FL127471
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211090169|gb|FL054358.1|FL054358
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|32849657|gb|CD989338.1|CD989338
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG                         GTAAAAGAAGACGCCCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211518615|gb|FL054338.1|FL054338
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
EST: gi|211087724|gb|FL054346.1|FL054346
EST:     GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG                         GTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT
genomic: GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGgtaggaaaaa ... atttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttatcagtttttgtttataattatggccttaagaagtcctctatttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCTTTCAAACTCCCTCGCAAAGGTGGAAAAGGAAAACAGATCTTTGGGAG
                                       tcctctattt  CT-rich tract
     atcagtttttgtttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atttaagtcctaagcatgatatgttcatgaaattctatcaatgcatttttatcagtttttgtttataattatggccttaagaagtcctctatttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCTTTCAAACTCCCTCGCAAAGGTGGAAAAGGAAAACAGATCTTTGGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA